Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07420 190 / 1e-61 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 187 / 4e-61 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT4G22756 110 / 9e-30 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 108 / 6e-29 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G12110 107 / 1e-28 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001556 [exp] 234 / 2e-78 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10016492 [exp] 198 / 5e-64 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 197 / 5e-64 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10004321 [exp] 107 / 6e-29 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10032193 [exp] 107 / 2e-28 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10028908 [exp] 100 / 1e-25 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1) Lus10004322 [exp] 91 / 4e-22 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10024555 [exp] 89 / 2e-21 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 88 / 2e-21 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245300 [exp] 192 / 7e-62 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 191 / 1e-61 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G116500 [exp] 107 / 1e-28 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.003G116000 [exp] 103 / 3e-27 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 100 / 7e-26 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004988 pacid=23174850 polypeptide=Lus10004988 locus=Lus10004988.g ID=Lus10004988.BGIv1.0 annot-version=v1.0 ATGGATACCCTCTTCGAATCCGGATGGCAGGTAAACCAACCTCAACTCAACTCACTCTATTACTTTGGTGTTTGTTCTGTGCAAATTCCTGAGGGTTTGT GTATTTTCAGGTATGCTACACCCTTTGGTCTGACATCTGAATATGCACACCCTGCTGAGATTCTGTTCCTCGGATTCGCCACGATCGCCGGCCCTGCAAT CACCGGGCCGCATCTTTCGACGCTGTGGTCGTTGGTGGTGGTTCGGGTTCTCAAAACCGTTGACGTTCACTCAGGTTTCCATTTCCCCTGGAGCCTGTCG AATTTCCTTCCTTTATATGGAGGTGCGGACTTCCACGACTATCACCATCGGCTTCTGTACACGAAATCCGGAAACTACACGTCCACCTTCACATACATGG ACCGGATATTTGGCACTGATCAAGGTTACAGAAAGCTGAAGGCTTTGAAGAGTGGTGAAGACGTACACGTCAGCACCACCATAACCAGCAGCAGCAAGAT TCTTTAG
AA sequence Show only first row Show all	>Lus10004988 pacid=23174850 polypeptide=Lus10004988 locus=Lus10004988.g ID=Lus10004988.BGIv1.0 annot-version=v1.0 MDTLFESGWQVNQPQLNSLYYFGVCSVQIPEGLCIFRYATPFGLTSEYAHPAEILFLGFATIAGPAITGPHLSTLWSLVVVRVLKTVDVHSGFHFPWSLS NFLPLYGGADFHDYHHRLLYTKSGNYTSTFTYMDRIFGTDQGYRKLKALKSGEDVHVSTTITSSSKIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	0	1
AT3G03000			EF hand calcium-binding protei...		Lus10004610 [exp]	3.5	0.8839
					Lus10033096 [exp]	3.6	0.9182
AT5G59100			Subtilisin-like serine endopep...		Lus10002964 [exp]	4.7	0.7389
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	5.1	0.9182
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	6.2	0.9182
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10040331 [exp]	6.5	0.7453
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	7.2	0.9182
AT5G66630		DAR5	DA1-related protein 5 (.1)		Lus10009329 [exp]	8.3	0.7344
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	8.4	0.9104
AT4G22410			Ubiquitin C-terminal hydrolase...		Lus10035548 [exp]	8.5	0.9101

Compare expression of checked genes

Lus10004988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.