Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59160 565 / 0 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G39840 553 / 0 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT2G29400 550 / 0 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G46820 548 / 0 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 506 / 0 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 501 / 2e-180 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 500 / 5e-180 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 487 / 5e-175 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 482 / 5e-173 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 297 / 3e-100 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016489 [exp] 614 / 0 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10030163 [exp] 564 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 564 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 561 / 0 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 556 / 0 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10042559 [exp] 548 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 546 / 0 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001555 [exp] 508 / 0 AT5G59160 470 / 2e-169 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10040742 [exp] 501 / 3e-180 AT5G59160 466 / 1e-166 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037700 [exp] 582 / 0 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G245700 [exp] 582 / 0 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.008G060800 [exp] 560 / 0 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 558 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 548 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 544 / 0 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 521 / 0 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G098600 [exp] 515 / 0 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.016G142700 [exp] 488 / 1e-175 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.005G024100 [exp] 481 / 1e-172 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10004989 pacid=23174826 polypeptide=Lus10004989 locus=Lus10004989.g ID=Lus10004989.BGIv1.0 annot-version=v1.0 ATGGCACAGCAAGGGAAACAGGCGTCAATCGACCCTGCAGTTCTGGACGACATTATCAACCGTTTGCTGGAATTCAAGCAAGCTCGGTTCGGCAGGCAGC AGCAGGTCCAGCTGAGTGAGAGCGAGATCCGCCAGCTCTGTACTGTTTCGAAAGACATCTTCCTCAACCAGCCTAATCTTCTTGAGCTCGAAGCTCCCAT TAAGATCTGCGGTGATATTCATGGACAGTACTCTGATCTCTTGAGGCTGTTTGAGTACGGTGGCTATCCCCCTAGTGCCAATTACTTATTCCTGGGAGAC TACGTTGATCGTGGCAAGCATAGTTTGGAAACAATATGTCTTTTGCTTGCCTACAAAATCAAGTACCCCGAAAACTTCTTTCTCTTAAGAGGAAACCACG AATCTGCCTCCATAAACCGGATCTACGGATTCTACGACGAATGTAAACGAAGGTTCAACGTTCGACTGTGGAAGACCTTCACCGATTGCTTCAATTGTCT CCCCGTCGCTGCACTTATAGACGACAAAATACTGTGCATGCACGGAGGCCTTTCTCCCGATCTTACGAATCTAGATCAGATTAGGAACGTAGTCCGTCCA ACTGATGTTCCTGACTCTGGCTTGCTCTGTGATCTGCTTTGGTCTGATCCCGGAAAGGACAGTAAAGGATGGGGGATGAATGATCGTGGCGTTTCGTATA CCTTTGGTCCGGATAAGGTGTCGGAATTCTTGATGAAGAATGATATGGACCTTATTTGCCGTGCCCATCAGGTTGTTGAGGATGGATACGAGTTCTTTGC AGATAGGCAGCTTGTGACTATCTTTTCTGCTCCGAATTACTGTGGCGAATTTGATAATTCTGGTGCCATGATGAGCGTGGACGAAACCTTGATGTGTTCT TTCCAAATACTCAAGCCAGCTGACAAAAGGTTTAGATTCGTGTGA
AA sequence Show only first row Show all	>Lus10004989 pacid=23174826 polypeptide=Lus10004989 locus=Lus10004989.g ID=Lus10004989.BGIv1.0 annot-version=v1.0 MAQQGKQASIDPAVLDDIINRLLEFKQARFGRQQQVQLSESEIRQLCTVSKDIFLNQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGYPPSANYLFLGD YVDRGKHSLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRNVVRP TDVPDSGLLCDLLWSDPGKDSKGWGMNDRGVSYTFGPDKVSEFLMKNDMDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNSGAMMSVDETLMCS FQILKPADKRFRFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10004989 [exp]	0	1
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031143 [exp]	5.9	0.8372
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	19.2	0.8094
AT2G34040			Apoptosis inhibitory protein 5...		Lus10013953 [exp]	24.3	0.7911
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10001520 [exp]	36.1	0.7817
AT5G13520			peptidase M1 family protein (....		Lus10040361 [exp]	38.3	0.7598
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	41.3	0.7286
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	47.1	0.7631
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	48.4	0.7789
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	87.6	0.6956
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10030951 [exp]	90.0	0.7112

Compare expression of checked genes

Lus10004989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.