Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36910 247 / 2e-82 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) AT4G34120 218 / 9e-71 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041576 [exp] 217 / 3e-70 AT4G36910 206 / 2e-66 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10002834 [exp] 193 / 1e-60 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10027885 [exp] 106 / 6e-27 AT4G34120 157 / 8e-47 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G140800 [exp] 255 / 2e-85 AT4G36910 300 / 6e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.007G046400 [exp] 251 / 7e-84 AT4G36910 301 / 5e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.001G303900 [exp] 220 / 1e-71 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.009G099200 [exp] 210 / 7e-68 AT4G34120 266 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10004992 pacid=23148938 polypeptide=Lus10004992 locus=Lus10004992.g ID=Lus10004992.BGIv1.0 annot-version=v1.0 ATGGACTCCCTTCTCCTCTCCTATTCTCCTGCCTTCATGCGCCTGTCCCCTGCCGCAACACATACAACTGCTGCTGCTGCTACTCTCGCGAATGCTACTC CCGTCGTTTCATTATCTCACCGGCACGTGGCTTCTCCATTTCTCTCTCGCGTCTCACCGGGACCTCTTCGTGTATCGTACCGTCGGTGCTCGTCGCATTC CACTGTAGCCGCGAGCTGCACCTTGATGGCCTCTGCGCTTCCGAATGGTGTCTACACGGTTGGCGATTTCATGACAAAGAAAGAGGATCTGCGTGTGGTG AAACCAACAACAACTGTGGATGAAGCATTGGAGACCCTTGTGGAATGCAGGATTACTGGCTTCCCTGTGATTGATGATGACTGGAAGTTGTGCACTGCTT TACTTATTATCGATTGTTTTACTGCCATTCCTGGCCAAAATCCGACAGTTGCTAAAAGGGCCTTTCATAGAGCAGTTGCGGTGGATTCCATCTTCTTGTT CCGTGTACTAATGGTTTTAATATTTCGACCAGGCCAAAGAGCTGAGAATGACATGTTTCCTGAAGTAGACAGCACCTGGAAAACATTTAATGAAGTTCAA AAGTTGCTCAGTAAGACCAACGGGAAAGTTGTTGGTGAGTTGATGACACCAGCACCCATGGTGGTTCGTGAAACAACTAATATTGAGGATGCTGCAAGAT TACTGCTGGAGACAAAGTTCCGACGTCTTCCAGTTGTAGATCCTGACGGGAAACTGGTTGGGATTATTACACGAGGAAACGTGGTAGGAGCTGCACTGCA AATAAAGCGTTCGTTGGAATCAAATGCATAG
AA sequence Show only first row Show all	>Lus10004992 pacid=23148938 polypeptide=Lus10004992 locus=Lus10004992.g ID=Lus10004992.BGIv1.0 annot-version=v1.0 MDSLLLSYSPAFMRLSPAATHTTAAAATLANATPVVSLSHRHVASPFLSRVSPGPLRVSYRRCSSHSTVAASCTLMASALPNGVYTVGDFMTKKEDLRVV KPTTTVDEALETLVECRITGFPVIDDDWKLCTALLIIDCFTAIPGQNPTVAKRAFHRAVAVDSIFLFRVLMVLIFRPGQRAENDMFPEVDSTWKTFNEVQ KLLSKTNGKVVGELMTPAPMVVRETTNIEDAARLLLETKFRRLPVVDPDGKLVGIITRGNVVGAALQIKRSLESNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10004992 [exp]	0	1
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	12.1	0.9169
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	17.9	0.9167
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	19.3	0.9049
AT1G43580			Sphingomyelin synthetase famil...		Lus10028111 [exp]	20.5	0.8632
AT1G33970			P-loop containing nucleoside t...		Lus10005299 [exp]	20.6	0.8946
					Lus10026740 [exp]	21.9	0.9105
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	25.0	0.8790
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10017221 [exp]	27.0	0.8999
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	29.2	0.9058
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	31.6	0.9056

Compare expression of checked genes

Lus10004992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.