Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23360 429 / 2e-134 Plant protein of unknown function (DUF869) (.1) AT1G19835 206 / 2e-54 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 191 / 1e-49 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 167 / 4e-42 Plant protein of unknown function (DUF869) (.1) AT3G19370 108 / 6e-24 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3) AT1G77580 99 / 5e-21 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 93 / 4e-19 Plant protein of unknown function (DUF869) (.1) AT3G05270 91 / 1e-18 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024324 [exp] 207 / 1e-54 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 206 / 2e-54 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 206 / 2e-54 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 187 / 5e-51 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 189 / 5e-49 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10014076 [exp] 139 / 5e-33 AT4G34100 1575 / 0.0 RING/U-box superfamily protein (.1.2) Lus10019839 [exp] 136 / 6e-32 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10029679 [exp] 100 / 2e-21 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10025674 [exp] 100 / 3e-21 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G140300 [exp] 822 / 0 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 793 / 0 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 307 / 2e-89 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 306 / 5e-89 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.002G024400 [exp] 213 / 3e-56 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 209 / 2e-55 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 119 / 2e-27 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 116 / 1e-26 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 98 / 1e-20 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 97 / 3e-20 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10004994 pacid=23148939 polypeptide=Lus10004994 locus=Lus10004994.g ID=Lus10004994.BGIv1.0 annot-version=v1.0 ATGGAGAATAATAATAGCAAAGGTTGGTTGTGTAAAACTAAGAAATCTGGTGAGAAACCGACTGTTGCTGCTGAAAAGTCTAGCCTCCCGTTGAAACCGG AAGACGAAGAGATACACAACCTTTTGACGGAAAAGGAGGAATTGGAGAATAACCTCAAATATCTGAAAGATAAGCTTGATTCCGTTCTGATAGACTGTCA TGCTAAAGACAGTGTAGCTAAGAATCATGGAAAAACGGCAAACGATGCCACACAAGGTCGGGAGAGAGCAGACGCAAGAGTAAGATCTCTGAAGCACGAA TTGGATGAGGCTTTACAGCAGAAAGCAGCTGGGGAGGAGAGATTAACTCAGTTGGACGCTGCTCTGAAGGAGTGTATGCAGCAGCTACGCTTTGTTAGAG ATGATCAGGAGAAAAGGATTCATGACGCCGTGACCAGAGCTTCCTTGGAGTTTGATGAGTCTCGGATGATGTTTGAAGAAAAACTAGCCGATGTGAGTAA AAGGCGTGCTAAACTAGGTGTTGAGGATACTCAACTCAGTGAAGCTCTGTTAGCCAAAGACAAGATGATAAGAGAGTTGAATAAGCAAAAGGCACAGCTA GAGTCGGACTTGAAAGCTCTAACTGCTAGCTTGGAGTTCACGGAGAAAGATAATGCTTCGCTTAAATATGAGGTTAGGGTGTTGGAGAAGGAACTTGAAA TTAGAAATGAGGAAAGAGAATTTAGCCGAAGAACTGCTGATGCGACGCACAAACAACATTTGGACAGTGTCAAGAGGATTGCAAAGTTGGAATCAGAGTG CCAGAGGCTGCGCCTCCTTGTCCGAAAGAGACTCCCAGGTCCTGCCACCTTAGCCAAGATGAGGACTGAGGCTGAAATCGTGGGAAGGGATTCAGTTGAA ACGAGAAGGAGAAGGTCTATTTCGGGTTCTAGTATGATGGTGGAGGATTCCGCTGATCAAATGTTTCCTACAGTTCCCAGCAAAAGCATCAACTTTCTGT CTGAGCAGGTAAATGTAGTTGAAGAAGAAAACAAGATTCTCAGGGAAGCACTTAGTAAAAAGGAGTTTGAGCTACAATCTTCTAGATCCATGTTTGCTCG TGCAGCTTCCAGATTATCACCGGTTGAGTCACATATGTATGAATCGCCCAGGACCCGGACATCTTATCTTTTCTCTCATGATGTATCTCTTAGCTCAGTG TCAGAGGTTGGAAGTGATGATAAGGTTAGCTCCGCTGGATCCATCTCAGAATGGGAGCACTCCAGATATGGAAAACGTATTGGCTTGCTGCCAACCAAAT CTTTTGGGGCTCCAGAAATGGATCTCATGAATGATTTTGTTGAAATGGAAAGGCTTGCTATAGTCTCAGTGGATAAACAACAGTCTGAAAGTCCTCAAGT GTCTTCAAACAGCAGCAGCACAGCTGCTAACCTGTTGAAAGGAGAAGTTAATGGGGCTGTAACTGCTATGGAAATTGTTCCAGTATTGGATTCCGGTTCA AGGAAGTCCAATGAGCAGATCAAGCCCAATGATAGTATGAATGGAAAAGATTGGCTTCATGAAATTCTTGGCTTGGTGTTGGAACAAAACCGAGTTTCAG AAAGGAAGTCTGATGAAGTATTGGAGGAGATTAGAGTAGCTTTGGAAAATGAAGAGAGAACTAACCCTGTTAAAGGTGCTGGTGCAGATTCAGTGAAGTC TACTACACCTGTTGCTGGACATCTCTTATGGAAATCCACCAATAAAGCAGATACTCTAGAGAGGAATGGGGCAACAAATGATATTGATGTTCCATCGGTG GATGCAAGCAATTCGGATATGGAAAAATCAGTATCCAAGATAATTGAGTTGCTAGAAGGTATTACTATGCAAAATCCAGCTTACAGTTCCACTGAATCAT GGTCTAGAAAAGATGCCAATTCTTTACCGTATAAGATTACAGAAACCACAACTGGGTACACAGTTCGTGTTTTCCAGTGGAAAACGTCTGAGCTGAGTAC TGTGTTGCAGCAAGTTGTTCATACTTGCTATGATATGTTGAGTGGAAAATGCAACGTGAACAAGTTCGCACAGGAGTTGACTTCTGCACTTGACTGGATT ATGAACCATTGCTTCTCTCTTCAAGATGTTTCAAGCATGAAGGAAGCAATCAAAAAGCATCTTCATTGGGATTCAAGAAGTGAAGGTGAAGCAGAGGTTT GTATTATTGGCTATCAGGATGAAGTTCAGATTTCAACTCAAGATGAAGCTACGAAGTTACAATGTGGTTTGGCTGATATGATTTCTGCAAAGACGGCCTT GGAAGGAAGACTCATGTCAGCTACAGTAGATAGTGAGACTTCGACAATTCAAGTTCACGAATCAGAAAAAACTAGCGCAAGCTTGCTATCCGAGCTGGAT AATGTGGAAGGTTCTAGGGGTACAATTGAGGCTCACAAGGTCATGATGAAAGATGATCTTGACACACAGCTAGCGATGGCCAAGGCAGAATTAAATGAGG CTCGCCAAAAGCTTTCTTCGTTGGAAGCGGAACTGGAGAACAGGAATAGCTGCTGTGAAGAATTGGAGGATACGTGTGTCGATTTGCAGCTCCAACTTGA AAGTGCGGCAGATAAGGTCTCGCCTAGCAATGAAGTCCACCATCCTGAAGAAAAGCAGCTTAGAACTAACTTGGAGATAGCAGAAGCTTCAAATAAGTTG GCAGAGTGCCAAGCGACTATCTTGAACCTGGGAAAGCAACTAAAGGCATTAACTTCACCAAAAGAAGCTGTGATGTTGGAAAATGTCATGTTTGAGCCGG GCAAGGCAAATGCCACCATGAGTACCGACTCTGATGGGACAAGCAAGGCTAGGTTGGACAATGTCATCTTTGAGCCGGACAAGGTAAATGCAACCATGAA GAGTGCATCTAATGGGACACCAAAGGCTAAGTTGAGAAACCAGAGGTCGACTCTGTTAGATAGGATGGTAGCAGAGGACAATGCTAAAGCCATTGCAACA GGCACAGCAGGGGATGTTAATGTGGTGACGGCACCTGTTGAAAAGCTGCTCACTTTAAGTGGAAGCAAACATGATGGCGATAACGATGATGATAATGATA ATGATGATGGAGTTACCATAAACAGCTTGGCCCTCGTGCCCGGTCACAAACGTGGAGTCGGAGGCTTGTGGAGAAATTTGCTTAAGAAAAAGAAGAAATC TGCTGGGCAGAAGCCACCCCTCGTATTCCCCAAGTAA
AA sequence Show only first row Show all	>Lus10004994 pacid=23148939 polypeptide=Lus10004994 locus=Lus10004994.g ID=Lus10004994.BGIv1.0 annot-version=v1.0 MENNNSKGWLCKTKKSGEKPTVAAEKSSLPLKPEDEEIHNLLTEKEELENNLKYLKDKLDSVLIDCHAKDSVAKNHGKTANDATQGRERADARVRSLKHE LDEALQQKAAGEERLTQLDAALKECMQQLRFVRDDQEKRIHDAVTRASLEFDESRMMFEEKLADVSKRRAKLGVEDTQLSEALLAKDKMIRELNKQKAQL ESDLKALTASLEFTEKDNASLKYEVRVLEKELEIRNEEREFSRRTADATHKQHLDSVKRIAKLESECQRLRLLVRKRLPGPATLAKMRTEAEIVGRDSVE TRRRRSISGSSMMVEDSADQMFPTVPSKSINFLSEQVNVVEEENKILREALSKKEFELQSSRSMFARAASRLSPVESHMYESPRTRTSYLFSHDVSLSSV SEVGSDDKVSSAGSISEWEHSRYGKRIGLLPTKSFGAPEMDLMNDFVEMERLAIVSVDKQQSESPQVSSNSSSTAANLLKGEVNGAVTAMEIVPVLDSGS RKSNEQIKPNDSMNGKDWLHEILGLVLEQNRVSERKSDEVLEEIRVALENEERTNPVKGAGADSVKSTTPVAGHLLWKSTNKADTLERNGATNDIDVPSV DASNSDMEKSVSKIIELLEGITMQNPAYSSTESWSRKDANSLPYKITETTTGYTVRVFQWKTSELSTVLQQVVHTCYDMLSGKCNVNKFAQELTSALDWI MNHCFSLQDVSSMKEAIKKHLHWDSRSEGEAEVCIIGYQDEVQISTQDEATKLQCGLADMISAKTALEGRLMSATVDSETSTIQVHESEKTSASLLSELD NVEGSRGTIEAHKVMMKDDLDTQLAMAKAELNEARQKLSSLEAELENRNSCCEELEDTCVDLQLQLESAADKVSPSNEVHHPEEKQLRTNLEIAEASNKL AECQATILNLGKQLKALTSPKEAVMLENVMFEPGKANATMSTDSDGTSKARLDNVIFEPDKVNATMKSASNGTPKAKLRNQRSTLLDRMVAEDNAKAIAT GTAGDVNVVTAPVEKLLTLSGSKHDGDNDDDNDNDDGVTINSLALVPGHKRGVGGLWRNLLKKKKKSAGQKPPLVFPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	0	1
AT5G42710			unknown protein		Lus10016315 [exp]	1.0	0.9825
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	2.6	0.9544
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	3.7	0.9752
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	4.2	0.9719
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	4.9	0.9514
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	4.9	0.9672
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	5.5	0.9401
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	6.0	0.9586
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	6.7	0.9622
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	7.3	0.9375

Compare expression of checked genes

Lus10004994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.