Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34090 206 / 5e-65 unknown protein AT2G23370 181 / 4e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041575 [exp] 351 / 2e-121 AT4G34090 429 / 2e-151 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045900 [exp] 246 / 1e-80 AT4G34090 405 / 5e-142 unknown protein Potri.009G099600 [exp] 221 / 8e-71 AT4G34090 471 / 6e-168 unknown protein Potri.001G304401 [exp] 77 / 8e-18 AT4G34090 144 / 2e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004995 pacid=23148943 polypeptide=Lus10004995 locus=Lus10004995.g ID=Lus10004995.BGIv1.0 annot-version=v1.0 ATGAGGATTGGAGGAATGGTGGTTAGCGCTCCACCGGCTACGTCTCTGCTCCTCGGTCACGTCTGCCGCTGCAAGCCCACGCTCCGACTCTTTTCCGCTT CTGCTTCTCCTTCTTCATATCTTTTGTTTTCTGACCATATTGATTTCATCAAAGATGTGGCTGCAACTCAGCCTCCGAAGCATTTGCCTCAATTGTTGAG AATTCTTCGGTCCAGAGGTACACTTCTGCTCCCACTTGTGGATCAGTTTATGCACAGAATCCTGGCGGAGGAGGATGCTAATGGCCTTTCCAAAGGTAAT GATGATATATTTGATGCAGCAGCGGTTGGGTTGTTTCCTGATATATTGGAGCGCAAAGTGATGCGTGATTTTGAGAGAGGAGACCAGGTTTCTGCTATGG TCACTGGGGAATTCTATACAAGGAAGGAGCACTTTCCTGGGTTTGGAAGACCCTTCGTATTCAATGCCGCTATATTGCTAAAGGTAGGACGCAAGGTAGA AGCTAAAGATGCTGAAGTTGCTGAGATGACGGAATGGGAAGATGAGCAGATAGAGTATATGGAAGAAAGAGTAACAGAAGATGGAAGGAAACAAGACCTC AACAAGGGCAAAAATCCTGCTCAGATAGCGGTGGACGAGGCAGCTTTCTTGGTGGACTTTACTTCTGTTGATGGAACTTGGGATGATTACTTGGGTGCTA TAAGGAGGCTGGTCTCCATGATATTGCCACATTCTTGGAATGTAGAGATTGAGAGAACTGAGAGGCACCACAATTACAAACCTCTACTTATTGTTAAAGT AGAAGAAGCAACATAG
AA sequence Show only first row Show all	>Lus10004995 pacid=23148943 polypeptide=Lus10004995 locus=Lus10004995.g ID=Lus10004995.BGIv1.0 annot-version=v1.0 MRIGGMVVSAPPATSLLLGHVCRCKPTLRLFSASASPSSYLLFSDHIDFIKDVAATQPPKHLPQLLRILRSRGTLLLPLVDQFMHRILAEEDANGLSKGN DDIFDAAAVGLFPDILERKVMRDFERGDQVSAMVTGEFYTRKEHFPGFGRPFVFNAAILLKVGRKVEAKDAEVAEMTEWEDEQIEYMEERVTEDGRKQDL NKGKNPAQIAVDEAAFLVDFTSVDGTWDDYLGAIRRLVSMILPHSWNVEIERTERHHNYKPLLIVKVEEAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34090			unknown protein		Lus10004995 [exp]	0	1
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	9.3	0.7949
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10011934 [exp]	10.6	0.7788
					Lus10036302 [exp]	13.5	0.7328
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	15.7	0.7752
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Lus10037966 [exp]	17.0	0.7631
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	17.5	0.7675
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	18.5	0.7754
AT1G11070			unknown protein		Lus10038307 [exp]	21.8	0.7666
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	23.8	0.7320
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	25.2	0.7516

Compare expression of checked genes

Lus10004995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.