Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029468 [exp] 153 / 4e-48 ND / Lus10029058 [exp] 154 / 5e-47 ND / Lus10007688 [exp] 152 / 6e-47 ND / Lus10032986 [exp] 146 / 1e-45 ND / Lus10032483 [exp] 145 / 8e-45 ND / Lus10034870 [exp] 144 / 8e-45 ND / Lus10025360 [exp] 144 / 3e-44 ND / Lus10025363 [exp] 145 / 4e-44 ND 39 / 0.002 Lus10005957 [exp] 147 / 2e-43 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004996 pacid=23148947 polypeptide=Lus10004996 locus=Lus10004996.g ID=Lus10004996.BGIv1.0 annot-version=v1.0 ATGACGGTGAGGAGGAGTTATTTGGTGGCTACGAGTCCGATACCTATCAGTCTCCACCATTTAGGGTTTGGTTCGTCTCATGCTTCAGCGAGCGTTGGTG TTGCAGCTGGGAGAGATGCTCGTTTTGCTCCTGCCAAGAGTACACATGGTGGGGTGATGGATGAGGAGGTCGGGGGAAACCTTTCCCGCACTTGGCAGCT GGAGTCGGGGATTGAGGATGGAGGGCCGATTGCGACCAGTGTGATTCCTAGTTTCGGGGGTCACATTGCGCATTATCTGTGGGAGCTCGGTGCAGACTAC CGTAACATCCGAGATTTCAGACGTGCCGACGATGTGATCGACGTTGACCCCCGATACATGTACTGGTATTGGCGCCATACCCACCCGCACATCCTCAAGC CCCTCCCTACTAGTGTTCTGGCACCGACAGATATGCTAGCTTACAGGGTGTTGGACCATATGCATCCATACCTTGTTGGGACGATGAGACAAGAGTACGA GTCTAATGCTGAGTACCTGGAGGCGGTCGAGCATCTCAGATGCAGTATTGCTGACATGTACGTGTCCTAA
AA sequence Show only first row Show all	>Lus10004996 pacid=23148947 polypeptide=Lus10004996 locus=Lus10004996.g ID=Lus10004996.BGIv1.0 annot-version=v1.0 MTVRRSYLVATSPIPISLHHLGFGSSHASASVGVAAGRDARFAPAKSTHGGVMDEEVGGNLSRTWQLESGIEDGGPIATSVIPSFGGHIAHYLWELGADY RNIRDFRRADDVIDVDPRYMYWYWRHTHPHILKPLPTSVLAPTDMLAYRVLDHMHPYLVGTMRQEYESNAEYLEAVEHLRCSIADMYVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004996 [exp]	0	1
					Lus10000363 [exp]	1.4	1.0000
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	1.7	1.0000
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	2.0	1.0000
					Lus10003285 [exp]	2.0	1.0000
					Lus10027602 [exp]	4.9	1.0000
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	5.3	1.0000
					Lus10025781 [exp]	5.5	1.0000
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	5.7	1.0000
AT1G66300			F-box/RNI-like/FBD-like domain...		Lus10023040 [exp]	5.9	0.8324
AT2G37890			Mitochondrial substrate carrie...		Lus10006265 [exp]	6.0	1.0000

Compare expression of checked genes

Lus10004996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.