Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35210 42 / 0.0002 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001991 [exp] 199 / 1e-64 AT1G76220 57 / 1e-09 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014448 [exp] 42 / 0.0002 AT2G17080 189 / 4e-60 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023963 [exp] 40 / 0.0002 AT2G17080 139 / 6e-42 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 41 / 0.0004 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 41 / 0.0004 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 40 / 0.0005 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025122 [exp] 40 / 0.0006 AT4G35210 214 / 3e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023958 [exp] 40 / 0.0006 AT4G35200 193 / 6e-61 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023953 [exp] 40 / 0.0006 AT4G35200 192 / 8e-61 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012466 [exp] 70 / 3e-14 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012100 [exp] 65 / 2e-12 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 64 / 3e-12 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012200 [exp] 63 / 6e-12 AT2G17080 130 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 62 / 2e-11 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 58 / 4e-10 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248975 [exp] 56 / 3e-09 AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 54 / 9e-09 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 54 / 9e-09 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 50 / 2e-07 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10004999 pacid=23148941 polypeptide=Lus10004999 locus=Lus10004999.g ID=Lus10004999.BGIv1.0 annot-version=v1.0 ATGCTCCATATCTCACATTCCGAACAGAACATCACCTCTGATCCTACCACCAAAATTGGTGTCGAAACAGTGCTAGATTCATCTGTCAGGTTGTTGGATA TGTGCAGCTTAGTGAGGGACATCCTTTCCCAGATGAAGCATTCTGTGCAAGATCTGGAATCATCTCTCAGGAGGATAAGGAGGAGATCAGGTGATCAATT ATTGTGCATCTCAAGCGACCAATTAGTTGATGCATACTTCATCTACAGGAAAAAGTTGAGTCATTTGGCCTCTAAGATGACGAAGAAGAAGAAGAATAAG AAGACACGCGGAGTTTCATCTGATAAGAGATCGATCAATTTGATTATCGTGTTGGAGGAAGTCAATAAAATCTGTAACGTAGAGTTTAAGAACATCATCA TGTCGTATGTTTCTGAACCAAAGAGGGCACATCCTTATGTGGTCTCAAAGCTGTTGGATCATTCCAGGAGGCGAATGGAGAAAGGAGAGTTAGCTTGTGC AACAGAAGTAGAAAGGATTAATGCAGAAATGTTTGTACTCATGTCCATAAAATTCACCAATGAAGAACAACTTCAAAGCTTGTTGGGAAGAGTAGAGTCA TTTCGATTAAGCATAGAAGAAGCATAG
AA sequence Show only first row Show all	>Lus10004999 pacid=23148941 polypeptide=Lus10004999 locus=Lus10004999.g ID=Lus10004999.BGIv1.0 annot-version=v1.0 MLHISHSEQNITSDPTTKIGVETVLDSSVRLLDMCSLVRDILSQMKHSVQDLESSLRRIRRRSGDQLLCISSDQLVDAYFIYRKKLSHLASKMTKKKKNK KTRGVSSDKRSINLIIVLEEVNKICNVEFKNIIMSYVSEPKRAHPYVVSKLLDHSRRRMEKGELACATEVERINAEMFVLMSIKFTNEEQLQSLLGRVES FRLSIEEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76220			Arabidopsis protein of unknown...		Lus10004999 [exp]	0	1
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10027838 [exp]	16.9	0.8136
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10035304 [exp]	218.6	0.7015
					Lus10031697 [exp]	251.8	0.6832

Compare expression of checked genes

Lus10004999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.