Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17070 62 / 5e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 59 / 6e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 58 / 1e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 57 / 2e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 47 / 8e-06 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 42 / 0.0004 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025126 [exp] 77 / 5e-16 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 76 / 1e-15 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 71 / 4e-14 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 70 / 1e-13 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025121 [exp] 68 / 2e-13 AT2G17080 147 / 6e-44 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 69 / 4e-13 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 68 / 6e-13 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 67 / 7e-13 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10003332 [exp] 66 / 3e-12 AT4G35200 177 / 3e-55 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249000 [exp] 115 / 2e-30 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 115 / 2e-30 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 115 / 4e-30 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248975 [exp] 112 / 4e-29 AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 108 / 8e-28 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012200 [exp] 106 / 8e-27 AT2G17080 130 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 102 / 3e-25 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012100 [exp] 91 / 5e-21 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 74 / 8e-15 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 65 / 8e-12 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10005000 pacid=23148942 polypeptide=Lus10005000 locus=Lus10005000.g ID=Lus10005000.BGIv1.0 annot-version=v1.0 ATGGCAACTGGTGGCTATCATATGAGATCAGCCAGTTCTCCTGTGAAGCCCCATCCATTAGTTGCAAGTCTTGAGGAAACACTGGACCAGTTGAAGGCAT CACAATCCTCACCTCTATCTTCCAAATTGAGAAGCCTGAAGGGGATCTACGAGGCGGTTTATGATCTGCTCCAATCACAATCGACTCGACAAGCTCTCTT CTCTAACAGGCAGAGCCAGTCAGTGGAACAAGCCCTGGGTGGATCCATGAGGATGTTGGAACTGTGCAGCAAGTTGAGAGATTTCTTCTCACAAATGAAG GAAATAATGCAGCAGCTTGGATCTTCACTACGGAGAAGGAGGACGAGAAGAAAATACGGGGAAGATCAATCTGCTGTCGTCCAAGATGCTGTTGTTGCTT ACTTGGTTTCAAGGAAGAGACTGACCACACTTGTCAGGAAGTTCATCAGGTGTAATTTCCAATCAGCGGCAGTAGTGATATCATCAAGCAGGGAAGATGA ATCAGATTCCACAGCTTTTTTTACCATATTGAGAGGCGTGGAGGAGGCTAGTGTTGAAGTTTTTGGATCCTTATTCTGCTTCATTTCTCAGCAAGGGACT ACACCATCACCCTCTTCTTCATCTGGCGGCTGGTCTTTCAGGCTAATTATATTAATGGCGTTGCAGTCCAAATGCTCTCACCCTGAATGTCAGGATGAGA ACAATGAGATGAAGAAGCTTGATTCTGAGATGATCAAACTCAGGGGATGCAAAGATGTGGACTTTCTGCAGGTACAGGAGGAGGCTATCAAAGGATTGGA GGAATTAGAATCCAACCTCAAGGAAATGGAGGAAGAACTGGAATGCATTTACAAGCGTCAGGTCAAAGCCAGAGTTTCCCTTCTCAATTGCTTCACTCGT TGA
AA sequence Show only first row Show all	>Lus10005000 pacid=23148942 polypeptide=Lus10005000 locus=Lus10005000.g ID=Lus10005000.BGIv1.0 annot-version=v1.0 MATGGYHMRSASSPVKPHPLVASLEETLDQLKASQSSPLSSKLRSLKGIYEAVYDLLQSQSTRQALFSNRQSQSVEQALGGSMRMLELCSKLRDFFSQMK EIMQQLGSSLRRRRTRRKYGEDQSAVVQDAVVAYLVSRKRLTTLVRKFIRCNFQSAAVVISSSREDESDSTAFFTILRGVEEASVEVFGSLFCFISQQGT TPSPSSSSGGWSFRLIILMALQSKCSHPECQDENNEMKKLDSEMIKLRGCKDVDFLQVQEEAIKGLEELESNLKEMEEELECIYKRQVKARVSLLNCFTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17070			Arabidopsis protein of unknown...		Lus10005000 [exp]	0	1
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030892 [exp]	9.3	0.8907
AT1G58070			unknown protein		Lus10015482 [exp]	16.8	0.8928
AT5G02640			unknown protein		Lus10009066 [exp]	17.1	0.8868
AT5G40020			Pathogenesis-related thaumatin...		Lus10008304 [exp]	23.8	0.8850
AT4G12440		APT4	adenine phosphoribosyl transfe...		Lus10032249 [exp]	31.0	0.8535
AT1G05060			unknown protein		Lus10030021 [exp]	34.9	0.8863
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	36.6	0.8854
AT3G59310			Eukaryotic protein of unknown ...		Lus10025530 [exp]	39.4	0.8839
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	49.5	0.8820
AT2G28410			unknown protein		Lus10022579 [exp]	49.6	0.8787

Compare expression of checked genes

Lus10005000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.