Plant FIBer expression Database

Lus10005002 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43690 713 / 0 ubiquitin interaction motif-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024546
[exp]
1118 / 0 AT1G43690 771 / 0.0 ubiquitin interaction motif-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G191300
[exp]
854 / 0 AT1G43690 707 / 0.0 ubiquitin interaction motif-containing protein (.1)
Potri.002G069100
[exp]
843 / 0 AT1G43690 741 / 0.0 ubiquitin interaction motif-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02809 UIM Ubiquitin interaction motif
Representative CDS sequence
>Lus10005002 pacid=23182071 polypeptide=Lus10005002 locus=Lus10005002.g ID=Lus10005002.BGIv1.0 annot-version=v1.0
ATGGCGGATCAAGAAGAAGATGACCTCAGAATGGCTCTTAGGTTGAGCATGCAGAACCCTTCGACACCAGAGCCGAAGCTGCAGAATTCTCCGCCGGAAC
CCAAGCGGAGCAAGCCTAGGGACACTGATGCTGCTGTTGCGGAGGGAGGGACCTCTGTCTCTCCGGATGATTCAAGGAGACTGCAGAGAGAGCTGATGGC
AGCTGCAGCTGAGAAGCGGATGCTCACTTCGCCCAAAATTGTGAAGCCGTCTTCTACTAGTACTAGTGCTGTTACTCATAGAAGCCCTATTAAAAAGCCT
GATTCTTCTACAAATGAGAATCATGGTGGTATGAAAGATCATAAATCGGGCCGAGAATTGTCGGCAGAAGAGGCCAATCAATTGTTCTCTATGGTGTTTG
GGACAGGCGTTTCCAAGGACATCCTTGCCCAATGGTGCAATCAGGGTATAAGGTTTAGCTCCGATCCTGAAACATCTATGGGGCTAGTGCAGCATGAAGG
CGGGCCCTGTGGCGTCTTAGCAACAATACAAGCATTTGTTCTCAAATACATCCTTTTCTTTCCGCTTGAAGTAGGCCAAGTTGGGCCAAACATGCATCAA
AATCATGGTTCCGGAAGACTGTTCAACACTAGATATGTGGCTTCGAACAATTTTTCAGCAGTTACGGAAGATGCGAGGGCAAGGGCCTTAGTCAAAAGTA
TGAGTGAGATATTGTTTCTTTGTGGAAGTGGTAATAGGGCTGTGATTGCCACGTTGAGTAACACAGATCATGGTACGGAAAGCCCTTCAAAAGATGAGGT
TATTGCAAAAGCACTTGAAAGCGTTTCTATAGAATCAGCCTCTGATTTGCAAAAGGTTCTTAGAATTGACACAGTTAGAAAAGAAACAAGTGCTTTGCAG
AGGCTTCAGGATACAATTCCCATATTCCAATCTCGCATGGGGGCATTGCTCTTTCTTATTTCCGCACTGCTTTCTCGAGGATTGGAGAAAGTTCAAGCGG
ACAGAGATGATCCCATTCTCCCACTGGTCACGGCACCTTTTGGGCATGCGTCCCAGGAAATAGTAAACTTATTACTCTGTGGTCAGGCAGTCGCTAATGT
ATTCGATGGTCGGATGGATTTGGGTGGTGGAATGTTTCTGAAAGGAATATCCAGCGGTGTCGAAGTTGGGTTTCTTACCCTGTTAGAATCCCTCAATTTC
TGTAAGGTTGGTCAGCATCTAAAAACTCCAAAGTGGCCTATATGGGTAATTGGTAGCGAGTCCCATTACACAGTTCTATTTGCTCTGGACACCTCTGTCC
AAGAGGAAAATGAGTTGGAGGAGAGGGAGTCCCAAATTCGAAAAGCTTTTGATGCTCAAGATCAGAGTGGTGGTGGTGGGTTCATCAGCGTAGAAGGTTT
CCATCAGGTCCTTAGGGATGTAAGCGTCAGACTACCGGCAGAGAAAGTTGATCATCTCTGCGGCAGTGGGTTCATCGTGTGGAGTGAATTATGGCAGGTG
ATTCTCGATCTAGACAAGAGTTCAGGAGGTCTAAAGGATTCAAGTGGGTTGATGGGGAAGAAAGTATTTGATCTTTACCATTTCAACGGCATTGCGAAAT
CCGATTTAAATGCTAGCAATAATACATCATCCTCCACTGGACCGGTCCAAAGACCTAGGCTGACAAAACTGAAGGTTTCAGTGCCACCAAGGTGGACCCC
GGAGGAGTTCATGACTGTGCCCTCTGCTTCTGCATCTGCATCGGGTAGTGGTGATTCTAAAGACACGACGGAAGTAAACAAGCCCGAGCCCTGCCAGCAT
GCACCACTGGTCGACTGTGTTAGAACACGGTGGCCTCGTGCAAGCTGCAATTGGCTAGGGGATCCACCCAGCATAGTCTGA
AA sequence
>Lus10005002 pacid=23182071 polypeptide=Lus10005002 locus=Lus10005002.g ID=Lus10005002.BGIv1.0 annot-version=v1.0
MADQEEDDLRMALRLSMQNPSTPEPKLQNSPPEPKRSKPRDTDAAVAEGGTSVSPDDSRRLQRELMAAAAEKRMLTSPKIVKPSSTSTSAVTHRSPIKKP
DSSTNENHGGMKDHKSGRELSAEEANQLFSMVFGTGVSKDILAQWCNQGIRFSSDPETSMGLVQHEGGPCGVLATIQAFVLKYILFFPLEVGQVGPNMHQ
NHGSGRLFNTRYVASNNFSAVTEDARARALVKSMSEILFLCGSGNRAVIATLSNTDHGTESPSKDEVIAKALESVSIESASDLQKVLRIDTVRKETSALQ
RLQDTIPIFQSRMGALLFLISALLSRGLEKVQADRDDPILPLVTAPFGHASQEIVNLLLCGQAVANVFDGRMDLGGGMFLKGISSGVEVGFLTLLESLNF
CKVGQHLKTPKWPIWVIGSESHYTVLFALDTSVQEENELEERESQIRKAFDAQDQSGGGGFISVEGFHQVLRDVSVRLPAEKVDHLCGSGFIVWSELWQV
ILDLDKSSGGLKDSSGLMGKKVFDLYHFNGIAKSDLNASNNTSSSTGPVQRPRLTKLKVSVPPRWTPEEFMTVPSASASASGSGDSKDTTEVNKPEPCQH
APLVDCVRTRWPRASCNWLGDPPSIV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G43690 ubiquitin interaction motif-co... Lus10005002
[exp]
0 1
AT2G32450 Calcium-binding tetratricopept... Lus10033182
[exp]
1.7 0.9150
AT5G21040 FBX2 F-box protein 2 (.1.2) Lus10008402
[exp]
2.0 0.9133
AT5G42350 Galactose oxidase/kelch repeat... Lus10013215
[exp]
2.8 0.9041
AT5G63840 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN... Lus10033490
[exp]
4.2 0.9126
AT5G65750 2-oxoglutarate dehydrogenase, ... Lus10031476
[exp]
5.0 0.8987
AT5G37510 CI76, EMB1467 embryo defective 1467, NADH-ub... Lus10009539
[exp]
5.9 0.8950
AT3G54540 ABCF4, ATGCN4 ATP-binding cassette F4, gener... Lus10016184
[exp]
6.3 0.8927
AT2G20810 GAUT10, LGT4 galacturonosyltransferase 10 (... Lus10018554
[exp]
9.6 0.8616
AT3G19870 unknown protein Lus10012903
[exp]
10.5 0.8881
AT1G13980 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBR... Lus10037140
[exp]
11.0 0.8957

Lus10005002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.