Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53440 335 / 1e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019025 [exp] 1691 / 0 AT5G53440 400 / 3e-119 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014800 [exp] 602 / 0 AT5G53440 438 / 2e-134 unknown protein Potri.012G013800 [exp] 597 / 0 AT5G53440 421 / 6e-128 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005006 pacid=23156366 polypeptide=Lus10005006 locus=Lus10005006.g ID=Lus10005006.BGIv1.0 annot-version=v1.0 ATGCCGAGGAGTTCACGCCACAAGTCGAGCAAGCACAAGGATGTTAAGGAAAGGGACTATTCAGATTCGGAGAAAGAGACAAGTTTTAAGGAGCGGAAGT CGAAGGATGAGAGCAGTTCTAGGGTTTTGAAGGAGTCTGCGTCTGGTGAGAAGCGGAAATTGGATTCCAAGGAGAGTAAGGATGCTGTTGTTGGCGGCTC TGGTAACGGTGAGCATTTGGAAGGGTATTCCTCTTCCTCGAAGCGACGAAAGGAGAGAACTGATGATGGTGCGAATGATAGGTGGAACGGAGGAGAGGAT GGTAAGGGTGAAGTGTCCAGGAAGTCGAAGGAGAAGTTGAGTGAATCGAAGAGCAAGAGGCGGGATGAGAGTTCGAAGAGAGAGGAGAATGCTGGGAATG TTGGTGAGACTGAAGAGGTAGGTAGAAGGAGCAGCGGGAAGAGTGAAGGGAAACATAAGGATTCCAATAGCCGAAAGGATGGGGCTGATAGAGACAGGGA GAGGGATATAAATAGGAAGGGTAAAGAAGCTAGGAGTGAGAAGTTGGCTGATGGTGAAGAGCATCGCTCTGGGAAGCAAGTGTCTGAAAAAACTGTGCTT AAAGTGCATGATGTGTTACATGATACAGAGTCTGAAAGCATTCAGGAGAAACGAACTCGGAGAAAGAGAGATGGTTCTGGTGATGGTGATAAGTATCAGG ATGATGTACGTGACAACCGTGATAGAGATGGAAATAAGGATGGAAGACCGAAGGATGAAAGATATAGAGAGAAGTATCGTGAGGAGAAGCATAGAGAGCG TTCTGCAAGAGATCGTATAAGTAGCAGATCTGATGATAAGCAGGCAAGGGATGAGCCTGATAGTGCAGGTACTCGGATAAAAAAGTCAAAGCCCCGGGAG AATGAAGTTGACCGTGATAGGGATAGTGATTTTGATCGTGACTTAGAGCATGACCTTGGTCGGGACCGTGATCATGAACGGGGACGGGACAATGATCGTT ACCGTGAGAGAGATCATGATCGTGAGCGTGATATTAATCGAGATAATGATAGAGAGCATGACTGGGATTATGAATGGGGCAGAGATCGCGAGAGGGATCA TGAGCGAGATAGAGATAGAGAGCGGGATTATGATTCGTTATATACTGATGATAGGAGAGAGAGGAACAAAGACAGCAGATCTCGAAAGAGGTCTCCTGAT GATCTTGATGATGACACTAAATCGAGAACGGCAAAAGGATCATATACAGATATAGAAAAGAAACCTTCCAGTATTAGTAGGGTTGAGGCGGATGCTGATA GGGGAAGGTCACATTCAGAAAACAACTTCACTGGGAGTAGGCGCAGGGATTCTCCAGTCACCAGTCCACAGGGGGCTGCAGATGAATATAGGCACGGGAA AGCTGAAGACTTGAGATACAGGAATGCTGGGTCAGAGCACAGGCCTAAAACCAATAGTTCAAGAGGTGGAAGTGTCTTTCCTGGAGGATCTGATAGACCT TCTAGGTTAAGAACCACTGATAAATCCATGAAAACGGTGGATGGCCACATGACAGATTTGTCTTTGGATAGATCTAATTCCATAGTTTCACCAATGGGGG TGGCAGAACGATCTCCTTCATCCAACATTGATCGTAGATACATGGGCAGAAATAATGTTAGACGGAGCCTTGAAATTGAAGATTCTGGAAGAAGGAACAG TGGTTCAATTGCTGCTAGAGATTTACCTTCGGGCGAGGAAAGATCAACTCGGGAAATGCCCTTGGAGAAAGATGATTCCAGTTTAAATGATTCCTCTTTT CACAACAGATCTAATCAGACCAATTCTGTTTTGAATCACCCTCCACCATCCATGAGAGGGGGTGTTAGCAGCCCGTCTTTTATGGGCTCATTTGATGATG ATGGTAGAGTCAACGCTGCTGGCCGCTACAAGAGGAGTGGGGATCACAACTTGGGACGAGGTCAAGTAAATGCTTGGAGGGGTGCCCCAAATTGGTCTTC CCCTCTCCCTAATGGTTTCCTTCCTTTTCCACATGGACCTCCACACGGGGGCTTTCAGGCTTTGATACCCCAGTTTCCATCTCCACCTATATTTGGTGTC AGACCATCTATGGAGATTAGCCACCCGTATCATATTACCGAGGCCGACAGGTTTTCTGGTCATTTGCGCCCACCACTCGGATGGCAGAATATGATGGATG GATCAGGGTCTTCTCACATGCATGGATGGGATGGAAGCAATGGTATATTTAGGGATGAGAGCCATATGTTTAGTGGACCGGAATGGAACCAGAATAGGCA TGCGATGAATGGTCATGGTTGGGAATCCAGTTCAGATATGTGGAAGGGGCAAAATGGTGATGTGGCTACTGACTTGGCATCAAAGTCACTGAAAGAGGAA AAAAATCAGGCTCCTGCAGATGATAGCTTGGCTTTACAGGCTGGTCAAAAGCAGAATGAAGCCCTTAACGACGATTCCAAGACAAAATTGGTTGAAAGGA AACCTGTTATTGCCTCTACAGCCAAAGGTTCTTCTGTATCTCACCCTAGGAGTGCCCATGAAAGGACCCTTGATCCTGCTAAAGTTTCAAAGGAGGAACG TTTTGCTAATTTTTGTAATGCCTATCTATCCAAGGTGGACATTTCTAGTGAACTTGCAAGTTCAGATTTGTATAGCCGATGCATGGGACTGCTGAAAATT GAAGTGAACACTTCTATTAATGTAGATGCTGATGTCTTGATAAATTTGAAGGATGGTGCAAGAGCAGTGCCTAAAAACTCCAGTGTGTTCTTCAGTAGTG CACTCGTCCCTGCACCGAGTGATTCCATATTCAAGAAAGCCATGGACATCTACAAGAAGCAGAGAACATCTGGGTTAGCTTGCGTAAATGGTGGAAAACT TGATGTTATACAGCCAGATGATCTGAAAGTGCAAAGTAAAGACATGGAGGAAACCGAGAAACCTGTCTTAGAGCTTGATACAGAAATGCTCGACGCTCCT GTTACAAATCCTGACACAGAAATTCCTGATGCTCCTGTTGCAAATGTAGAAGAAGCGGTAGCTGACAATGTTTCTTCTGTCGACAAATTGGGAGATGAGA TTGTCAAAAGCCATACAGAGGAGGAGGTTCCTGTCCATGCTCCTACATCTCCAGTAAGTCTAGACCTGGTAGTAGAAACTCCTAATATCAACGAAGACAA GAAGCCACTAGAAGGCATCAGTACTGCGATTGAGGCTGACGAAGAAAAGTCTTCCGATCACGCGATACCCGAGGACATTGCGGGTGATGAATCTGGTCCA TTCCCTGAAGTTCCCGCTCAAAGCTCCTCCCCTTTGCCCAGTGATGGTCAGGAGGTGCTCGCGAAGCTAATCTCGAACGACAGTCCAGCTGGCAATGTTG AAGAAAAGGTGGAGGAAGAGGAGGAAGGAGTAAGTGGGTGTGTAATAGTTGGGGAAGATGGTGATGGGAAGGGAAATGAGGTATTGATGATGGATGAGGC TACTAGTAAGTCTGAGTCGGTAATGTTGAGTCGGATACATGATTCTCCTGAAAGTACACATTGA
AA sequence Show only first row Show all	>Lus10005006 pacid=23156366 polypeptide=Lus10005006 locus=Lus10005006.g ID=Lus10005006.BGIv1.0 annot-version=v1.0 MPRSSRHKSSKHKDVKERDYSDSEKETSFKERKSKDESSSRVLKESASGEKRKLDSKESKDAVVGGSGNGEHLEGYSSSSKRRKERTDDGANDRWNGGED GKGEVSRKSKEKLSESKSKRRDESSKREENAGNVGETEEVGRRSSGKSEGKHKDSNSRKDGADRDRERDINRKGKEARSEKLADGEEHRSGKQVSEKTVL KVHDVLHDTESESIQEKRTRRKRDGSGDGDKYQDDVRDNRDRDGNKDGRPKDERYREKYREEKHRERSARDRISSRSDDKQARDEPDSAGTRIKKSKPRE NEVDRDRDSDFDRDLEHDLGRDRDHERGRDNDRYRERDHDRERDINRDNDREHDWDYEWGRDRERDHERDRDRERDYDSLYTDDRRERNKDSRSRKRSPD DLDDDTKSRTAKGSYTDIEKKPSSISRVEADADRGRSHSENNFTGSRRRDSPVTSPQGAADEYRHGKAEDLRYRNAGSEHRPKTNSSRGGSVFPGGSDRP SRLRTTDKSMKTVDGHMTDLSLDRSNSIVSPMGVAERSPSSNIDRRYMGRNNVRRSLEIEDSGRRNSGSIAARDLPSGEERSTREMPLEKDDSSLNDSSF HNRSNQTNSVLNHPPPSMRGGVSSPSFMGSFDDDGRVNAAGRYKRSGDHNLGRGQVNAWRGAPNWSSPLPNGFLPFPHGPPHGGFQALIPQFPSPPIFGV RPSMEISHPYHITEADRFSGHLRPPLGWQNMMDGSGSSHMHGWDGSNGIFRDESHMFSGPEWNQNRHAMNGHGWESSSDMWKGQNGDVATDLASKSLKEE KNQAPADDSLALQAGQKQNEALNDDSKTKLVERKPVIASTAKGSSVSHPRSAHERTLDPAKVSKEERFANFCNAYLSKVDISSELASSDLYSRCMGLLKI EVNTSINVDADVLINLKDGARAVPKNSSVFFSSALVPAPSDSIFKKAMDIYKKQRTSGLACVNGGKLDVIQPDDLKVQSKDMEETEKPVLELDTEMLDAP VTNPDTEIPDAPVANVEEAVADNVSSVDKLGDEIVKSHTEEEVPVHAPTSPVSLDLVVETPNINEDKKPLEGISTAIEADEEKSSDHAIPEDIAGDESGP FPEVPAQSSSPLPSDGQEVLAKLISNDSPAGNVEEKVEEEEEGVSGCVIVGEDGDGKGNEVLMMDEATSKSESVMLSRIHDSPESTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53440			unknown protein		Lus10005006 [exp]	0	1
AT5G53440			unknown protein		Lus10019025 [exp]	1.0	0.8864
AT3G02280			Flavodoxin family protein (.1)		Lus10017589 [exp]	17.1	0.7828
AT2G20330			Transducin/WD40 repeat-like su...		Lus10024967 [exp]	24.7	0.7459
AT4G12640			RNA recognition motif (RRM)-co...		Lus10025188 [exp]	29.4	0.7279
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	29.5	0.7066
AT5G59830			unknown protein		Lus10005889 [exp]	89.3	0.6614
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	105.8	0.6659
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10040785 [exp]	177.4	0.6910

Compare expression of checked genes

Lus10005006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.