Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53430 594 / 0 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 574 / 0 SDG16, ATX4 SET domain protein 16 (.1) AT3G61740 468 / 5e-149 SDG14, ATX3 SET domain protein 14 (.1.2) AT2G31650 176 / 8e-45 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 172 / 2e-43 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G42400 120 / 3e-27 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT4G30860 91 / 7e-19 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G76710 91 / 1e-18 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT2G23380 87 / 5e-17 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT1G02580 86 / 8e-17 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019026 [exp] 1133 / 0 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10010121 [exp] 758 / 0 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10030262 [exp] 583 / 0 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10004012 [exp] 526 / 3e-175 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10012626 [exp] 447 / 2e-140 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10026725 [exp] 175 / 2e-44 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 169 / 2e-42 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10016051 [exp] 119 / 5e-27 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10025172 [exp] 119 / 8e-27 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G013900 [exp] 667 / 0 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 661 / 0 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.014G098400 [exp] 486 / 3e-155 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G170600 [exp] 481 / 3e-153 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.002G232800 [exp] 170 / 8e-43 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.018G023000 [exp] 126 / 5e-29 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 125 / 9e-29 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.014G146300 [exp] 124 / 9e-29 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G260100 [exp] 122 / 4e-28 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G195400 [exp] 96 / 2e-20 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10005007 pacid=23156359 polypeptide=Lus10005007 locus=Lus10005007.g ID=Lus10005007.BGIv1.0 annot-version=v1.0 ATGATAATCAAACGCAACTTGAAATCGCGAGTGCCGAGTCTCAAGCGCTGTAAACTCGACGACTCGGCATGTGAACCCGACGATACAACAAGGAACAAGA AGAAGAAGCGGAAGCTCAACGAAGGAGGAGGAGGTTATTGCCCACTCAATTTCTTAAGTCAGGTCGCCAACGGGATAATTCCCGTTGGTTTCCGCGGGAT TCTTAGCTCCGCTGCTCTCGCCGGCGGCGGTCACATAGGTTTCGCCGCAGCTTCCTGGTGCACCGAGGTGTCCTGCTCACCTCCAGAGGAGGACGCGGAG TTGGACTCTCAATTTAAGGTTCCGGAGGCCAGTAACCCGGCCGAGGAGGTTTCTCGACCTCCGATTGTCCGGACGTCGAGAGGGAGAGTTCAAGTACTCC CTTCGCGGTTTAACGATTCGGTTCTTGAGAATTGGAGGGACGAGGGGAGGACTAGGTTGCAGGACGATAGGTTCCAGGAGGACGATGTTAATGTTGTCCA ATGTGATGCCACTACCAGTAGGAAGTCGAAAGAGAAAATGAAGTTCAGTTCTAAAACACCGAAAATAGTTTCTACGAACGCCAGGAATCAGCGGAGCTAT GAGAGGGCTGGTTATTTTGATAGTAGACGAGGGGCAGCACTATTTGACGAAGATGACATGTTAGGAGCGGGGTTTCGGAGTTTCGACGTTAAGAAGAACT CTACTTCTCGGAGTACTCTGAGCTTGCTGCATCGTCAATTACCAGTTGAGGACAAATGTGGAATCGTCGATTTATATGGCAGTTCAGAGAGGTGTAAGAA GAACGATGGTATGTTTGGACCTGAAGATTTCTACTCTGGTGATATTGTCTGGGCAAAAGCAGGGATGAAGGACCCATATTGGCCGGCTATTGTGATCGAC CCTATGACTCAGGCACCTGAGCTGGTACTAAGGTCTTGTATACCTGATGCAGCTTGTATGATGTTTTTGGGTTATTCTGGGGACGATCAAAGGGATTATG CTTGGGTGAGGAGGGGCATGATCTTTCCATTTATGGATTTTGTAGACAGGTTCCAGAATCAGCAATTGAATGACTACAAGTCCAGCGATTTCCAGATGGC AATTGAGGAGGCGTTCATGGTAGAACAGGGTTTTACAGAGAAGTTGATGCAGGAAATAAATCTGATTGCCGGGAATACCACTTGCGAGGAACCAGTGGCT AGATGGTTCCAAGAGGCCAGTGGTTCAAACCAGTATCATGATATGCAATCGCCAAACCAGGCAAGTATCCTGGGCTTGCTTGTGATGGTGATGAAGAAAC ATTATAAGTGGTCTTGTGAAGGATGTGGGATAGGTCTCTCTCCTAAATTGTTGAAGAATATGAAAGTTGCAACTCCAGGAGGCCAACTGTTATGCACCAC TTGTGCCAGATTAACAAAGTCAAAACATTATTGTGGAATATGTAAGAAGATCTGGAACCATTCAGATAGTGTCAGCTGGGTACGATGTGATGGATGTAAG GTTTGGGTTCATGCAGAATGCGACAAAATTTCCAGCAATCGATTTAAGGACTTAGGTGCAACCGATTACTACTGCCCTCCTTGTCAAGCGAAGTTTAATT TTGAATTGTCAGATTCAGAAATATATCAACCAAATACCAAGCTGAACAAGAGCATAGGGAAACAACCCCTGCCTAACAAAGTTTCTGTAATCTGTTCTGG TGTAGAGGGCATATACTACCCAAGCTTCCATATGGTCGTCTGTAAATGCGGGTCCTGTGGGACAGAGAAGCAAGCACTGAGTGAATGGGAGAGGCACACA GGTTCCAAAATTAGAAATTGGAGGACTAGCATCAGGGTGAAAGATTCCATGCTCCCTCTGGAACAATGGATGCCAGATAGCTGTTCATCAAGAATGCTAT GGAGCAAGACATGTCCAGGATTTTACTTCATGGGTGGTGCTCTGAAGCCAACTGATGTCGATACACTGTGGGTCCATATAACATGTGCTTGGTTCAGACC TGAAGTCGCTTTTGCTAGTGATGAAAAGATGGAACCCGCTCTTGGGATTTTATGCATCCCTTCCAATTCTTTTGTGAAGATTTGTGTCATTTGTAAGCAA ATACATGGTTCATGCACCCAATGCTGCAAATGTTCGACGTATTACCATGCAATGTGTGCTTCACGGGCTGGTTACCGAATGGAGTTACACTGCTTAGAAA CAAAAGGAAAACAGACGACAAAAATGGTTTCTTATTGTGCATATCACAGGGCTCCAAATCCAGATACCGTCTTGATTATACAGACTCCTGCAGGGGTATT TTCCGCCAAAAGTCTTCTTCAAAATAAGAAGAGGGCTGGTACACGGCTAATCTCATCTACTAGACTGAAAATTGAAGAGTTGCCCATAGAAGAAACGACA AAAGTTGAACCACTATCAGCTGCAAGGTGCCGTGTCTATAATAGAGAAACTAACAACAGAAAGAGAACAACAACAGAAGCTGTACCACACCGTTTGGCAA GGGTATGCCGCCATCCTCGAGCCATGATCCAGAGTTTGAACACATCAAGGGTGGTGCAGGAGCCAGAAAGTTTTGCTTCATTTAGGGAAAGACTATACCA CTTGCAGGCAAGCATACATGGATGGGGTCTCTTTGCTCGAAGGAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGAGGTGAGCAGGTCAGGGGCAGT ATTGCAGATCTTAGGGAGGCACGCTATCGTTTAGAAGGGAAAGACTGCTATTTATTTAAGATCAGCGAAGAGGTAGTTGTGGATGCAACTGATAAAGGAA ACATAGCTCGCCTGATTAACCATTCCTGTATGCCCAATTGTTATGCAAGGATCATGAGCGTGGGTGACGATGAAAGCCGTATAGTCCTTATCGCGAAGAC AAAAGTAGCCTCGGGCGACGAGCTGACGTATGATTACTTGTTCGATCCTGATGAACCAGAAGAGTTCAAGGTCCCCTGTCTGTGTAATTCTCCAAACTGC AGAAAGTTCATGAACTAA
AA sequence Show only first row Show all	>Lus10005007 pacid=23156359 polypeptide=Lus10005007 locus=Lus10005007.g ID=Lus10005007.BGIv1.0 annot-version=v1.0 MIIKRNLKSRVPSLKRCKLDDSACEPDDTTRNKKKKRKLNEGGGGYCPLNFLSQVANGIIPVGFRGILSSAALAGGGHIGFAAASWCTEVSCSPPEEDAE LDSQFKVPEASNPAEEVSRPPIVRTSRGRVQVLPSRFNDSVLENWRDEGRTRLQDDRFQEDDVNVVQCDATTSRKSKEKMKFSSKTPKIVSTNARNQRSY ERAGYFDSRRGAALFDEDDMLGAGFRSFDVKKNSTSRSTLSLLHRQLPVEDKCGIVDLYGSSERCKKNDGMFGPEDFYSGDIVWAKAGMKDPYWPAIVID PMTQAPELVLRSCIPDAACMMFLGYSGDDQRDYAWVRRGMIFPFMDFVDRFQNQQLNDYKSSDFQMAIEEAFMVEQGFTEKLMQEINLIAGNTTCEEPVA RWFQEASGSNQYHDMQSPNQASILGLLVMVMKKHYKWSCEGCGIGLSPKLLKNMKVATPGGQLLCTTCARLTKSKHYCGICKKIWNHSDSVSWVRCDGCK VWVHAECDKISSNRFKDLGATDYYCPPCQAKFNFELSDSEIYQPNTKLNKSIGKQPLPNKVSVICSGVEGIYYPSFHMVVCKCGSCGTEKQALSEWERHT GSKIRNWRTSIRVKDSMLPLEQWMPDSCSSRMLWSKTCPGFYFMGGALKPTDVDTLWVHITCAWFRPEVAFASDEKMEPALGILCIPSNSFVKICVICKQ IHGSCTQCCKCSTYYHAMCASRAGYRMELHCLETKGKQTTKMVSYCAYHRAPNPDTVLIIQTPAGVFSAKSLLQNKKRAGTRLISSTRLKIEELPIEETT KVEPLSAARCRVYNRETNNRKRTTTEAVPHRLARVCRHPRAMIQSLNTSRVVQEPESFASFRERLYHLQASIHGWGLFARRNIQEGEMVLEYRGEQVRGS IADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTKVASGDELTYDYLFDPDEPEEFKVPCLCNSPNC RKFMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	0	1
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	2.8	0.8479
AT1G63490			transcription factor jumonji (...		Lus10008531 [exp]	3.0	0.8548
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	3.6	0.8743
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	4.0	0.8363
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	4.7	0.8610
AT3G46220			unknown protein		Lus10040874 [exp]	4.9	0.8438
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Lus10036169 [exp]	5.5	0.8273
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	6.2	0.8287
AT1G63490			transcription factor jumonji (...		Lus10008495 [exp]	7.7	0.8466
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	8.7	0.8043

Compare expression of checked genes

Lus10005007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.