Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53420 254 / 2e-84 CCT motif family protein (.1.2.3) AT4G27900 226 / 3e-73 CCT motif family protein (.1.2) AT5G41380 82 / 1e-17 CCT motif family protein (.1) AT1G63820 81 / 2e-17 CCT motif family protein (.1) AT2G33350 82 / 3e-17 CCT motif family protein (.1.2) AT1G04500 77 / 8e-16 CCT motif family protein (.1) AT3G12890 66 / 3e-12 ASML2 activator of spomin::LUC2 (.1) AT5G59990 63 / 2e-11 CCT motif family protein (.1.2) AT3G21880 57 / 4e-09 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT5G15850 55 / 2e-08 CO COL1, ATCOL1 CONSTANS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019027 [exp] 583 / 0 AT5G53420 250 / 8e-83 CCT motif family protein (.1.2.3) Lus10014919 [exp] 321 / 2e-110 AT5G53420 205 / 3e-65 CCT motif family protein (.1.2.3) Lus10027344 [exp] 312 / 4e-107 AT5G53420 209 / 3e-67 CCT motif family protein (.1.2.3) Lus10014478 [exp] 75 / 1e-15 AT1G04500 219 / 4e-70 CCT motif family protein (.1) Lus10023727 [exp] 76 / 5e-15 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10032288 [exp] 75 / 5e-15 AT1G63820 160 / 5e-47 CCT motif family protein (.1) Lus10024655 [exp] 72 / 4e-14 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10031192 [exp] 62 / 6e-11 AT3G12890 107 / 2e-27 activator of spomin::LUC2 (.1) Lus10031770 [exp] 62 / 1e-10 AT3G12890 104 / 2e-26 activator of spomin::LUC2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014000 [exp] 374 / 4e-131 AT5G53420 257 / 1e-85 CCT motif family protein (.1.2.3) Potri.015G014000 [exp] 367 / 3e-128 AT5G53420 275 / 1e-92 CCT motif family protein (.1.2.3) Potri.010G066100 [exp] 92 / 9e-21 AT1G04500 263 / 3e-84 CCT motif family protein (.1) Potri.008G171500 [exp] 81 / 4e-17 AT1G04500 305 / 8e-101 CCT motif family protein (.1) Potri.001G233600 [exp] 79 / 4e-17 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2) Potri.001G101200 [exp] 77 / 5e-16 AT5G41380 187 / 4e-57 CCT motif family protein (.1) Potri.003G130500 [exp] 77 / 9e-16 AT5G41380 210 / 8e-66 CCT motif family protein (.1) Potri.007G066800 [exp] 64 / 2e-11 AT3G12890 120 / 2e-32 activator of spomin::LUC2 (.1) Potri.001G136700 [exp] 64 / 2e-11 AT3G12890 85 / 3e-19 activator of spomin::LUC2 (.1) Potri.005G097700 [exp] 62 / 6e-11 AT3G12890 156 / 2e-46 activator of spomin::LUC2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10005008 pacid=23156362 polypeptide=Lus10005008 locus=Lus10005008.g ID=Lus10005008.BGIv1.0 annot-version=v1.0 ATGTATGATGAGACCGGGATACTGTTTCCGTACATTCACAACTTCTCCCAAGATTTCCAGCAGCTTGAAGAGTACTGCAACCACCAAAAGGACAATGCTT CCATGAGCAACATGATCTCAGCTTCGACCATATGTGAATATGACTTGGGAGGGGAAGGAGATCTGTTCAAAGCTCCAGAACTGATCATTGAGGATCCTAT CCTCAGCATGGATCCCATGACAGCAGCCATATCAATGATCTCCTGTGGGGAAGAAGTCCTTACCCCATCAGGATTGGAAATCGGGGATACCAACACCGAT CAGAACGAGCACCAGCAGCAACTTCTAAGTGATGTTTTCTACGAGTGCAAGAAGGACCTGATGGAAATGGCAGCAGTCATGGAAGGAGATAATAGCCAAG AGTTCTCGGATGTTCTTGATATCAAGACCCTTCCTCCTTTGAGAACTGAGGAGACTACCCGAATGCTGCAAGAGTTGGTTCCTGATGATGTAGGGTTGTC AAAGAGTGTTAGCTCGGGATGTTTAAATGGAATGGACTGGATTTCTGGAGCTTCAGTGAAGCAGCCTAGCTTTCTGGACTTTCCTGGTATCGATTTTACT GCTGCTTATGGGATGCGACGAGCTTTCAGCGAAGGAGATATCAAGGCACTTGGAAATGGAAACATGGCCCTAATCAATTCTCCACGGCCTCTGATTATCA GAAGCTGCAGTTCTGATGCCCGCAAGGAGAAGCTTTCCAGATACAGAGACAAGAAAAACAGGAGGAACTTTGGCAGGAAGATCAAGTATGCATGCAGGAA GGCATTAGCAGACAGCCAGCCTAGGGTCCGAGGAAGGTTTGCTAAGACAGAAGACTCGCCATCATCGTCGTCATCTGATTATGTGTTCAAAGGCTAA
AA sequence Show only first row Show all	>Lus10005008 pacid=23156362 polypeptide=Lus10005008 locus=Lus10005008.g ID=Lus10005008.BGIv1.0 annot-version=v1.0 MYDETGILFPYIHNFSQDFQQLEEYCNHQKDNASMSNMISASTICEYDLGGEGDLFKAPELIIEDPILSMDPMTAAISMISCGEEVLTPSGLEIGDTNTD QNEHQQQLLSDVFYECKKDLMEMAAVMEGDNSQEFSDVLDIKTLPPLRTEETTRMLQELVPDDVGLSKSVSSGCLNGMDWISGASVKQPSFLDFPGIDFT AAYGMRRAFSEGDIKALGNGNMALINSPRPLIIRSCSSDARKEKLSRYRDKKNRRNFGRKIKYACRKALADSQPRVRGRFAKTEDSPSSSSSDYVFKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53420			CCT motif family protein (.1.2...		Lus10005008 [exp]	0	1
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	5.7	0.8067
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	13.5	0.8220
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10040336 [exp]	15.5	0.7573
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	16.0	0.7510
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10009706 [exp]	19.5	0.7769
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	20.2	0.7955
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	30.0	0.7403
AT3G29280			unknown protein		Lus10018197 [exp]	31.9	0.7351
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10014963 [exp]	32.2	0.7156
AT5G18610			Protein kinase superfamily pro...		Lus10023473 [exp]	36.2	0.7672

Compare expression of checked genes

Lus10005008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.