Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53400 265 / 2e-87 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones superfamily protein (.1) AT4G27890 247 / 2e-80 HSP20-like chaperones superfamily protein (.1) AT5G58740 69 / 6e-14 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019028 [exp] 394 / 2e-138 AT5G53400 324 / 3e-111 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10040656 [exp] 213 / 1e-68 AT5G53400 216 / 3e-70 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10018250 [exp] 209 / 7e-67 AT5G53400 213 / 4e-69 BOBBER1, HSP20-like chaperones superfamily protein (.1) Lus10040670 [exp] 72 / 5e-15 AT5G58740 216 / 2e-73 HSP20-like chaperones superfamily protein (.1) Lus10018234 [exp] 72 / 5e-15 AT5G58740 266 / 8e-93 HSP20-like chaperones superfamily protein (.1) Lus10027048 [exp] 69 / 1e-14 AT4G27890 68 / 3e-15 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013900 [exp] 301 / 1e-101 AT5G53400 283 / 8e-95 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.012G014100 [exp] 299 / 4e-101 AT5G53400 277 / 4e-93 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.003G100900 [exp] 231 / 8e-75 AT5G53400 232 / 2e-75 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.001G132500 [exp] 226 / 2e-73 AT5G53400 225 / 1e-73 BOBBER1, HSP20-like chaperones superfamily protein (.1) Potri.001G251204 [exp] 72 / 3e-15 AT5G58740 298 / 1e-105 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain
Representative CDS sequence Show only first row Show all	>Lus10005009 pacid=23156364 polypeptide=Lus10005009 locus=Lus10005009.g ID=Lus10005009.BGIv1.0 annot-version=v1.0 ATGCTCTACAACCTTTCCGAGCTCGTTTCATTTCCTTTATCACTAGTGAGCAAATCCCTCCGTCACCAACACTCCATCGTCGACCTAGTCCCAACTTTCG CAGTCCACCGTAGAAAGGAAAGCAGAACCATGGCGTTGATCTCGGAGTACGAAGAGGAAGACATTGGCCCTAAGACCGCTTCGTCATCTGCGACGGCTGC GTCTACACCTCCTGCCAAACCATCGACTTTCACCGCGCCTTTTGATCCCAGCAATCCGCTAGGGCTCGTGGAGAAACTGTTCGACTTCGTGGCTTCGGAA AGCGACTTCCTATCCAAGGACTCGGCCGAGAAAGAGATCGCCGCAGTTGTCAAGGCTGCCAAGGAGAAGAAGAGTAAGAAGTTGAAAAGAGAGAAGGAAG CCGCTGAGAAAGAAGCTGCTGCCAAGGTCGAGGCTAAGAGGTTAAAGGAGGAAGCGAAGAAGCCAGCTGTCAAGGCGGAGGTTGAGAAGAAGGAAGAGAG TGGCGTTAAAGCTCCAAATAAAGGTAATGGACTTGATATGGAGCAATACTCGTGGACACAGACCCTGCAGGAGGTCACAGTTCTCGTTCCAGTTCCTTCA GGGACTAAGTCGAAGTTTGTTGTGTGCGACATTAAGAAAAACCACTTGAAAGTTGGACTCAAAGGTCAACCTCCAATTATCGAGGGTGAACTTCATAAGC CCATCAAGGTCGATGATTGTTATTGGAGCATAGAGGATCAGAATACAATCTCAGTGCTATTGACCAAGCATGACCAAATGACATGGTGGAAATGTTTGGT GAAAGGAGGTCCTGAAATTGATACACAGAAGGTTGAACCTGAAAATAGCAAGCTCTCTGACCTGGATCCCGAGACTCGCCAGACTGTTGAAAAGATGATG TTTGATCAGAGACAGAAGCAAATGGGCCTCCCGTCAAGTGATGAGATGCAGAAGCAGGATATTCTGAAGAAGTTCATGGCTGAGGTGAGTAGCAGCAGTA TGTAA
AA sequence Show only first row Show all	>Lus10005009 pacid=23156364 polypeptide=Lus10005009 locus=Lus10005009.g ID=Lus10005009.BGIv1.0 annot-version=v1.0 MLYNLSELVSFPLSLVSKSLRHQHSIVDLVPTFAVHRRKESRTMALISEYEEEDIGPKTASSSATAASTPPAKPSTFTAPFDPSNPLGLVEKLFDFVASE SDFLSKDSAEKEIAAVVKAAKEKKSKKLKREKEAAEKEAAAKVEAKRLKEEAKKPAVKAEVEKKEESGVKAPNKGNGLDMEQYSWTQTLQEVTVLVPVPS GTKSKFVVCDIKKNHLKVGLKGQPPIIEGELHKPIKVDDCYWSIEDQNTISVLLTKHDQMTWWKCLVKGGPEIDTQKVEPENSKLSDLDPETRQTVEKMM FDQRQKQMGLPSSDEMQKQDILKKFMAEVSSSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	0	1
AT1G30070			SGS domain-containing protein ...		Lus10038500 [exp]	1.0	0.9653
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10025888 [exp]	2.8	0.9317
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	4.7	0.9539
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	4.9	0.9492
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	6.5	0.9427
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	7.5	0.9462
AT3G15040			Protein of unknown function, D...		Lus10004207 [exp]	7.5	0.8542
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004340 [exp]	8.9	0.8980
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	9.2	0.9438
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10042947 [exp]	9.7	0.8985

Compare expression of checked genes

Lus10005009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.