Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13540 1161 / 0 ENS, CBP80, ABH1, ATCBP80 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019031 [exp] 872 / 0 AT2G13540 686 / 0.0 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1) Lus10019032 [exp] 663 / 0 AT2G13540 477 / 1e-163 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G049200 [exp] 1345 / 0 AT2G13540 1189 / 0.0 ENSALADA, CAP-BINDING PROTEIN 80, ABA HYPERSENSITIVE 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain CL0020 [flax] [poplar] TPR PF09088 [flax] [poplar] MIF4G_like MIF4G like CL0020 [flax] [poplar] TPR PF09090 [flax] [poplar] MIF4G_like_2 MIF4G like
Representative CDS sequence Show only first row Show all	>Lus10005012 pacid=23156352 polypeptide=Lus10005012 locus=Lus10005012.g ID=Lus10005012.BGIv1.0 annot-version=v1.0 ATGTTGAACCAAACAAGATGCTTGTCAAATATTGGGCCTAGCCCAGGAGATAATTACAGTACCTCTAATTTGCCTACTGCATCTTTATTCAGAACGGTTG CAGCTCCGCCGGGAACCACATTAAACCCGCGTTCTGCAACTTCGTTCTCTCCCCTCACTTTGCTCTCAGACGGCAGGAACTGGGAACAAAAGATGAGCAG TTGGAGAAGCCTTCTTCTGCGAATCGGGGACAAGTGCCCCGAGTATGGCAGCAACGCTGACTTCAAAGACCACATTGAAACATGCTCGGGAGTTATTAGG CGAGAGCTGGAGCATTCCGCCGAAGATATTTCTAGTTTCCTTCTGCAATGTGCTGAGCAATTGCCGCATAAGGTTCCACTTTATGGTTCTGTGATTGGTC TATTGAACCTTGAAAATGAGGATTTTGTAAAAGGTGTTGTTGAGACTACCCAGACTCGTTTTCAGGAGGGACTGGATTCTGGCAGCTGTGACAGGATTCG TGTATTGCTGCGATTTCTGACTGCTCTGATGTGTAGTAAAGTTCTGCAACCTGCTTCCCTTGTGGTTGTCTTTGAAACATTACTGTCTTCTGCTGCTACC ACATTGGATGAGGAGAAGGGAAATCCTTCGTGGAAAGCTCGTGGTGATTTCTTTGTAACTTGTATTTTATCGTGCCTTCCATGGGGTGGATCAGAATTAG CGGAGCAAGTTCCCGACGAGATTGAGAGAATTATGGTTGGGATGGAGGCATATTTGAGCATAAGAAGGCATAATTCAGACATTGGCTTGTCTTTTTTTGA AGATGATGATTGCAGAGGAAGTGAGAAGGACTTCTTAGAGGATTTATGGGATAGGATAAAAGCTCTATCTACTAATGGATGGAAAGTCGATAGCGTTCCC AGACCTCATTTGGCATTTGAAGCTCAGCTGGTTAGTGGAAAGGCTCATGAGCTAGGCTGCCTTAATGCTCCCGAGCAACCTGAGCCACTTCCACACCATA CGGGGATAGCTTATGGCAGGGAAAAGCATATTGCAGAACTAAGGTATCCTCAACGGATACGGAGGCTAAATATATTCCCAACGGGTAAAAGTGAGGATAT GCAACCTATAGATCGTTTCATTGTGGAAGAGTATCTACTGGATGTGCTTTTATTCCTCAATGGCTGTCGGAAGGAATGTGCTTCCAGCATGGTTGGCCTG CCTGTGCCATTTCGGTACGAGTATCTAATGGCAGAGACTATATTTGCTCAGATGCTTTTGCTTCCACAACCTCCATTCAACCCACTATATTATACATTGG TTATCATGGACCTCTGTAAGGCTCTTCCTGGGGCGTTTCCTGCCGTTGTCGCTGGAGCTGTCCGTGCTCTTTTTGAAAAGATCTCAGATTTAGATATGGA GTGCCGCAATAGACTTATCCTCTGGTTTTCTCACCATCTGTCAAACTTTCAATTCATCTGGCCATGGGAGGAATGGGGCTTTGTTCTTGACCTTCCTAAA TGGGCCCCTCAGCGTGTCTTTGTGCAGGAGGTTTTGGAGAGAGAAGTTCGACTTTCATACTGGGACAAGGTTAAGCAGAGCGTTGAAAATGCACCTGCTT TAGAAGAGTTGCTTCCTCTCAAGGGGAGTCCGAACTTCAAGTACAGTGTTGAAGATGGGAGAGAAAAAACAGAATGTCATGCAATCTCAGCAGAGCTTAG TAACAAGGTGAAGGGAAGGGCACTTGCTCGAGAAGTAATCTCGTGGGTTGAAGAAACGGTGTTAACCAGTCATGGTTGGGAAGTTACACTGTCAGTGATC GTACAGACTCTGCTTGATATTGGTTCTAAGAGTTTCACTCACTTGATTACTATTCTGGAGAGGTATGGTCAAGTCATTGCACGGCTCTGCCCAGACCTTG ATAAGCAAGTCTTGCTGATAGCTGAATTGAGTTCGTACTGGGAGAATAACACCCAGATGTCAGCCATAGCAATAGATCGGATGATGGGCTACCGCCTGCT CTCTAATCTAGCTATCATAAGATGGGTCTTTTCTCCAGCAAATGTAGATTTATTTCATATTTCTGATCGTCCGTGGGAGATACTAAGGAATGCAATTAGC AAGACTTGCAATCGTATGTCAGATCTGAGGAAAGAGGTCGCGTCTCTGAAGAAGAATGTGCTAGTAGCTGAAGAAGCTGCAGCCAAGGCAAAAGCAGAGT TAGATGCTTCCGAGTCCAACCTTACATTGATGAATGGAGAGCCTGTTTTGGGTGATAATCCTGTGAAGATGAAGCGCTTGAAGTCACATGCCGAAAAAGC CAAAGAAGAGGAGGAATCCGTGCGTGATTCTTTGGAAGCTAAGGAGGCTCTGCTTACACGAGCGACCGTTGAAAATGAGGAACTGTTCCTTGCTTTGTAC AAAAACTTATCGGATGTGTTGAGGGAGCGGTTGCCTGATGCATCTAAAGCTCAGACATTACAAGACTTGAAGTCAGCCCAAACAGATGAGATGGCTGTTG ATGCCGATCAACCATCAACAATGGAAGTAGATGAGGAGAATGGGAGTACTAAGAAAAGTCGATCAAATGGTGAGAGTGGTAGCAGTGTCTACAATATAGG TGAAAAAGAGCAGTGGTGCCTGACAACTCTTGGCTACATTAAGTCCCTCTCCAGGCAATATGCTTCCGAGGTGTGGTCACACATTGAGAAGTTGGATGCA GAGGTTCTGACTGAGGATGTCCACCCTCTTTTCCGGAGAGCAGTATATGCCGGTTTGCAGCGGCCGATAGACGAGGTTTCATCGGGATGA
AA sequence Show only first row Show all	>Lus10005012 pacid=23156352 polypeptide=Lus10005012 locus=Lus10005012.g ID=Lus10005012.BGIv1.0 annot-version=v1.0 MLNQTRCLSNIGPSPGDNYSTSNLPTASLFRTVAAPPGTTLNPRSATSFSPLTLLSDGRNWEQKMSSWRSLLLRIGDKCPEYGSNADFKDHIETCSGVIR RELEHSAEDISSFLLQCAEQLPHKVPLYGSVIGLLNLENEDFVKGVVETTQTRFQEGLDSGSCDRIRVLLRFLTALMCSKVLQPASLVVVFETLLSSAAT TLDEEKGNPSWKARGDFFVTCILSCLPWGGSELAEQVPDEIERIMVGMEAYLSIRRHNSDIGLSFFEDDDCRGSEKDFLEDLWDRIKALSTNGWKVDSVP RPHLAFEAQLVSGKAHELGCLNAPEQPEPLPHHTGIAYGREKHIAELRYPQRIRRLNIFPTGKSEDMQPIDRFIVEEYLLDVLLFLNGCRKECASSMVGL PVPFRYEYLMAETIFAQMLLLPQPPFNPLYYTLVIMDLCKALPGAFPAVVAGAVRALFEKISDLDMECRNRLILWFSHHLSNFQFIWPWEEWGFVLDLPK WAPQRVFVQEVLEREVRLSYWDKVKQSVENAPALEELLPLKGSPNFKYSVEDGREKTECHAISAELSNKVKGRALAREVISWVEETVLTSHGWEVTLSVI VQTLLDIGSKSFTHLITILERYGQVIARLCPDLDKQVLLIAELSSYWENNTQMSAIAIDRMMGYRLLSNLAIIRWVFSPANVDLFHISDRPWEILRNAIS KTCNRMSDLRKEVASLKKNVLVAEEAAAKAKAELDASESNLTLMNGEPVLGDNPVKMKRLKSHAEKAKEEEESVRDSLEAKEALLTRATVENEELFLALY KNLSDVLRERLPDASKAQTLQDLKSAQTDEMAVDADQPSTMEVDEENGSTKKSRSNGESGSSVYNIGEKEQWCLTTLGYIKSLSRQYASEVWSHIEKLDA EVLTEDVHPLFRRAVYAGLQRPIDEVSSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	0	1
AT5G46070			Guanylate-binding family prote...		Lus10015327 [exp]	2.2	0.9385
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	2.8	0.9418
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10037989 [exp]	3.5	0.9388
AT3G14120			unknown protein		Lus10015675 [exp]	4.2	0.9381
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019031 [exp]	5.5	0.9156
AT1G64260			MuDR family transposase (.1)		Lus10010073 [exp]	8.0	0.9293
AT3G14120			unknown protein		Lus10037684 [exp]	8.0	0.9345
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	8.0	0.9388
AT4G28200			unknown protein		Lus10003351 [exp]	8.8	0.9324
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	9.2	0.9329

Compare expression of checked genes

Lus10005012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.