Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20060 275 / 6e-96 UBC19 ubiquitin-conjugating enzyme19 (.1.2) AT1G50490 268 / 3e-93 UBC20 ubiquitin-conjugating enzyme 20 (.1) AT1G14400 128 / 4e-38 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT2G02760 128 / 4e-38 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT5G62540 125 / 3e-37 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT1G78870 117 / 5e-34 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT1G16890 116 / 2e-33 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT5G56150 115 / 5e-33 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT1G64230 114 / 6e-33 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT4G27960 114 / 1e-32 UBC9 ubiquitin conjugating enzyme 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019034 [exp] 325 / 2e-115 AT3G20060 292 / 1e-102 ubiquitin-conjugating enzyme19 (.1.2) Lus10036727 [exp] 129 / 2e-38 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 129 / 2e-38 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 129 / 2e-38 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10013263 [exp] 127 / 9e-38 AT2G02760 304 / 6e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10017654 [exp] 119 / 1e-34 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 119 / 1e-34 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10027846 [exp] 116 / 2e-33 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10032352 [exp] 115 / 6e-33 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254500 [exp] 297 / 2e-104 AT3G20060 295 / 1e-103 ubiquitin-conjugating enzyme19 (.1.2) Potri.009G049600 [exp] 296 / 2e-104 AT3G20060 296 / 3e-104 ubiquitin-conjugating enzyme19 (.1.2) Potri.008G041300 [exp] 215 / 5e-72 AT3G20060 223 / 7e-75 ubiquitin-conjugating enzyme19 (.1.2) Potri.010G220600 [exp] 209 / 1e-69 AT3G20060 216 / 3e-72 ubiquitin-conjugating enzyme19 (.1.2) Potri.013G064400 [exp] 129 / 2e-38 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G064000 [exp] 126 / 1e-37 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.019G039200 [exp] 126 / 1e-37 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.011G111400 [exp] 117 / 4e-34 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G392500 [exp] 117 / 5e-34 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G471200 [exp] 117 / 9e-34 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10005014 pacid=23156355 polypeptide=Lus10005014 locus=Lus10005014.g ID=Lus10005014.BGIv1.0 annot-version=v1.0 ATGGCTACTGTTAACGGGTACCAAGCCAACACCCCGGCAGCCACCGCGGCGTCGGCTCCTGCTCCGACTAAAAACGCCGATACTCAATCTGTGCTGAAAA GGTTGCAGTCTGAGCTGATGGCCTTAATGATGAGTGGGGAAACTGGGATATCAGCTTTCCCAGAGGAAGACAACATCTTCTGCTGGAAAGGAACCATTAA TGGAAGCAAAGACACAGTGTTCGAAGGGACCGAGTACAAGCTATCTTTAGCTTTCCCTAACAACTACCCGTTCAAGCCACCAAAGGTGAAGTTTGAGACC GGCTGCTTCCATCCTAATGTCGATGTATACGGAAACATTTGCCTCGACATTCTCCAGGATAAGTGGTCATCTGCATACGATGTTCGAACTATACTGATAT CGATTCAGAGCTTGCTTGGAGAGCCGAACATCAGTTCGCCTCTCAACAATCAAGCAGCACAACTATGGCCTAATCAGGAAGAGTATAGGAAGATGGTGGA GAAGATGTACAAGCCTCCAACAAGTGCATAG
AA sequence Show only first row Show all	>Lus10005014 pacid=23156355 polypeptide=Lus10005014 locus=Lus10005014.g ID=Lus10005014.BGIv1.0 annot-version=v1.0 MATVNGYQANTPAATAASAPAPTKNADTQSVLKRLQSELMALMMSGETGISAFPEEDNIFCWKGTINGSKDTVFEGTEYKLSLAFPNNYPFKPPKVKFET GCFHPNVDVYGNICLDILQDKWSSAYDVRTILISIQSLLGEPNISSPLNNQAAQLWPNQEEYRKMVEKMYKPPTSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Lus10005014 [exp]	0	1
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Lus10019034 [exp]	1.0	0.9366
AT5G09995			unknown protein		Lus10016816 [exp]	4.9	0.8944
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	7.7	0.8894
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	17.0	0.8826
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	18.1	0.8997
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	20.6	0.8910
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10027192 [exp]	22.7	0.8961
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	25.2	0.8877
AT4G35890			winged-helix DNA-binding trans...		Lus10025951 [exp]	25.9	0.8872
AT5G55610			unknown protein		Lus10004412 [exp]	29.4	0.8812

Compare expression of checked genes

Lus10005014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.