Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 223 / 3e-66 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 199 / 1e-57 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 164 / 2e-45 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 155 / 1e-42 Leucine-rich repeat protein kinase family protein (.1) AT3G24240 150 / 1e-40 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G33170 147 / 9e-40 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G56040 147 / 1e-39 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 146 / 2e-39 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 143 / 3e-38 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 140 / 2e-37 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019035 [exp] 503 / 5e-172 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 453 / 8e-153 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005016 [exp] 348 / 1e-121 AT4G08850 268 / 5e-83 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 249 / 2e-75 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 244 / 4e-75 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 243 / 3e-73 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 202 / 8e-59 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10031161 [exp] 195 / 3e-56 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 179 / 8e-51 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G124400 [exp] 225 / 4e-67 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 222 / 5e-66 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 220 / 2e-65 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G007925 [exp] 219 / 3e-65 AT4G08850 518 / 1e-168 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123800 [exp] 220 / 5e-65 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 219 / 5e-65 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 216 / 7e-64 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.014G195100 [exp] 216 / 1e-63 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G261900 [exp] 213 / 8e-63 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.013G036600 [exp] 212 / 9e-63 AT4G08850 578 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10005015 pacid=23156356 polypeptide=Lus10005015 locus=Lus10005015.g ID=Lus10005015.BGIv1.0 annot-version=v1.0 ATGATATGGAGCTGCTGTGCAATCTGGAGGAGCAGGAAGCGAACCAGTTGCGATGAGGAACCACAAAAAGAAGGCAAGGACGGCGAATTTATGTTCTCTT CAGCGGAGGCGGTCTACGAGGAAATCATTAAAGCTACTGACGACTTCCACGACCTGATAGGGAAAGGCCGGTATGGCAACGTTTTCAAGGCGAAACTGCC TTCAGGGATGATAGTTGCAGTGAAGAAGTTCCATTCAGCAGCAGAACCAGGGGACCCGAAACAGTTCATAAGCGAGATCAAGGCATTGACGGAAATAAGG CATCAAAACATTGCCAGATTTTACGGTTACTGCGCTCACGAGCGACACTCGTTTTTCCTGTACGAGTACCTCGAAATAGGGAGCATGGCTTCCGTTCTGA GCAACGACCGAGAGGCAGGGACCGTGTTTGACCGGACAAAGAGGTACAACGTTATCAGAGGAGTGGCTGATGCATTGACATACATCCACCATGAATGCTC CCCGCCAATTATTCATCAAGACACCGATGTTTCTGGAACCTACTGCAATATTGCGCCTGAACTGACTGACACGATGAAGGTGACGGAGATGAGTGATGTG TATAGCTTTGGAGTGGTGGCTCTGGAAGTGATCCAAGGGAGTCATCCAAATGAGTTGGTAGCTCGAATCTCAATGCATAAACGCAACAACATGGAGTTGG AGCTGAAGGAGATTTTGGATCCAAGATTACCTGCGCCTGCAACTCAAGTAGAGGACAAATTGAGGCTGATCTTTAATCTTGCTTTCTCGTGCCTGAGCAA TGATCCGACATTAAGGCCAGATATGAGAATAGTTTCCTTGGTCTTGTCCAAGTTAGAAATAGTCGCTTAA
AA sequence Show only first row Show all	>Lus10005015 pacid=23156356 polypeptide=Lus10005015 locus=Lus10005015.g ID=Lus10005015.BGIv1.0 annot-version=v1.0 MIWSCCAIWRSRKRTSCDEEPQKEGKDGEFMFSSAEAVYEEIIKATDDFHDLIGKGRYGNVFKAKLPSGMIVAVKKFHSAAEPGDPKQFISEIKALTEIR HQNIARFYGYCAHERHSFFLYEYLEIGSMASVLSNDREAGTVFDRTKRYNVIRGVADALTYIHHECSPPIIHQDTDVSGTYCNIAPELTDTMKVTEMSDV YSFGVVALEVIQGSHPNELVARISMHKRNNMELELKEILDPRLPAPATQVEDKLRLIFNLAFSCLSNDPTLRPDMRIVSLVLSKLEIVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005015 [exp]	0	1
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	6.6	0.7187
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003704 [exp]	9.7	0.6797
AT3G23750			Leucine-rich repeat protein ki...		Lus10023220 [exp]	14.7	0.6703
AT1G27170			transmembrane receptors;ATP bi...		Lus10008319 [exp]	17.3	0.6384
					Lus10041330 [exp]	18.3	0.6147
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029658 [exp]	19.6	0.6462
AT4G36210			Protein of unknown function (D...		Lus10033181 [exp]	24.1	0.6278
					Lus10019378 [exp]	39.4	0.5949
AT3G06240			F-box family protein (.1)		Lus10014935 [exp]	42.2	0.5573
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10009759 [exp]	43.3	0.6378

Compare expression of checked genes

Lus10005015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.