Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 267 / 1e-82 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 254 / 1e-77 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 208 / 2e-61 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 204 / 5e-60 Leucine-rich repeat protein kinase family protein (.1) AT3G24240 192 / 1e-55 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G33170 190 / 5e-55 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G28650 189 / 8e-55 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28490 188 / 2e-54 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 187 / 3e-54 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G61480 187 / 6e-54 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019036 [exp] 508 / 1e-174 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 411 / 3e-137 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005015 [exp] 348 / 1e-121 AT4G08850 223 / 3e-66 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 266 / 6e-84 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 268 / 4e-83 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 266 / 2e-82 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 251 / 6e-77 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008229 [exp] 218 / 5e-71 AT4G08850 261 / 8e-81 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 234 / 2e-70 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G124100 [exp] 263 / 9e-89 AT4G08850 293 / 3e-92 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 276 / 2e-86 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 272 / 3e-85 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 270 / 5e-84 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G099200 [exp] 268 / 2e-83 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 267 / 3e-83 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 268 / 4e-83 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123800 [exp] 266 / 2e-82 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124300 [exp] 263 / 2e-81 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G261900 [exp] 261 / 4e-81 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005016 pacid=23156354 polypeptide=Lus10005016 locus=Lus10005016.g ID=Lus10005016.BGIv1.0 annot-version=v1.0 ATGACAGTTGCAGTGAAGAAGTTCCATTCAGCAGCAGAACCAGGGGAGATGAAACAGTTTCAAAGTGAGATCAAGACGTTGACCGAGATAAGGCATCGAA ACATTGTCAGGTTCCACGGCTACTGCGCCCACCGAAGACACTCATTCCTTCTGTACGAGTACATAGAGAGAGGGAGCTTGGAGTCCGTGCTGAGCAACAA CCGTGAGGCAGGAACCGTGTTTGACTGGGCCAAGAGGTACAACATTATCAGAGGAGTGGCTGATGCGTTGACATACATCCACCATGAATGCTTCCCTCCG ATTGTTCATCGGGACATTAAGAGCAGCAACATTCTTCTGGATGCGGACTATGAAGCTCATGTCTCCGATTTCGGAACTGCCAGGCCTCTGAAGCTTGATT CTTCCAATTGCACCGGTGTTGCTGGAACCTACGGCTATATTGCGCCTGAACTGGCGTACACGTTTAAGGTGACGGAGATGAGCGATGTATACAGCTTCGG GGTGGTGGCTCTGGAAGTGATTCAAGGGAGTTATCCACATGAGTTGGTATCTCGAATCTCGATGCATCAACGCAACAGGGAGATGGAGCTGAACCTGAAG GAGATTTTGGATCCAAGATTACCTGAGCCTGCAACTGAAGTTGAGGACAGACTAAAGCTGATCATTGATCTTTGTTTCTCGTGCCTAAGCAATGATCCGA TATTAAGGCCAGATATGAGAATAGTTTCTCTGGTCTTGTCCAAGTTAGAAATAGTCGCTTAA
AA sequence Show only first row Show all	>Lus10005016 pacid=23156354 polypeptide=Lus10005016 locus=Lus10005016.g ID=Lus10005016.BGIv1.0 annot-version=v1.0 MTVAVKKFHSAAEPGEMKQFQSEIKTLTEIRHRNIVRFHGYCAHRRHSFLLYEYIERGSLESVLSNNREAGTVFDWAKRYNIIRGVADALTYIHHECFPP IVHRDIKSSNILLDADYEAHVSDFGTARPLKLDSSNCTGVAGTYGYIAPELAYTFKVTEMSDVYSFGVVALEVIQGSYPHELVSRISMHQRNREMELNLK EILDPRLPEPATEVEDRLKLIIDLCFSCLSNDPILRPDMRIVSLVLSKLEIVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	0	1
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	1.0	0.9685
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	2.0	0.9492
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	2.0	0.9338
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	3.2	0.9327
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	3.9	0.9403
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	5.5	0.9283
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	7.5	0.9045
AT2G46630			unknown protein		Lus10005994 [exp]	7.9	0.9063
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10027580 [exp]	8.8	0.8987
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	9.2	0.8986

Compare expression of checked genes

Lus10005016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.