Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 531 / 7e-176 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 416 / 6e-131 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 325 / 5e-97 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17750 321 / 1e-95 AtPEPR2 PEP1 receptor 2 (.1) AT5G63930 315 / 1e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 316 / 2e-93 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 310 / 2e-92 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G48940 310 / 2e-91 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G33170 308 / 9e-91 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 303 / 4e-89 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019036 [exp] 1088 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 1067 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 515 / 2e-169 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 508 / 2e-166 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 419 / 3e-132 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 409 / 3e-128 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 342 / 5e-103 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008230 [exp] 333 / 1e-100 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10020936 [exp] 316 / 5e-96 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G122500 [exp] 423 / 2e-133 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.012G124300 [exp] 401 / 4e-126 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 403 / 3e-125 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 390 / 7e-120 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 390 / 7e-120 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.015G123800 [exp] 384 / 2e-119 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 381 / 1e-118 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 374 / 2e-115 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 369 / 6e-114 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 369 / 6e-114 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005017 pacid=23156363 polypeptide=Lus10005017 locus=Lus10005017.g ID=Lus10005017.BGIv1.0 annot-version=v1.0 ATGGCTTACTTACCTTCTTTCTCACTATTAGCAATAATAATCTTACTATATCCTTTGACCATCTCCTCAGCTAACAACCACCCACAAGAAGTTGAAGCTC TGCTCCAATGGAAAGCCACCCTAACCAAAACCCACCATGCCATGGACACCTCATGGACTCACCTACGTTCTCCTTGCACGAGCTGGTACGGAGTCGGATG CAACAAGGCTGGTCGAGTCCACCGGCTAAACCTCAGTGTATCTGGCATCCAAGGTAGCACCTTTCAACACTTCCCGTTCCACAGTCTCCCTAAACTTTCC TACATTGACCTCGACCAAAACGAGCTCTCAGGTCCCATCCCTCCTCAACTCTCTAACCTCTCGAACCATCTTGTTTACCTTGACCTGTCGGAGAATCAGT TCTCTGGCACCATCCCGCCCGTGATTGGTCTCCTTGAACACCTTAACACCCTCCATCTTGCTGATAATCAGCTGGTGGGTCACATTCCTGAGGAGCTCAG TCAGTTGAGCCGTCTTCAGGATCTTGCATTGTATAACAACGGCTTGACCGGTTCGATTCCTGCGTCTTTGGGGAACTTGAGCAACTTGGAGTGGCTTTAC ATCTATAACAATTCCCTTTCGGGCTCTCTTCCTCCTGAGTTGGGGAAGTTGTCGGAGTTGGTTGAGCTCTACACCGACCAGAATAACCTTATAGGTTCCA TTCCTTCTAGTTATGGCAAGTTGCGAAAACTTAATCTGTTCTTTGCTTTCAAGAACAGACTCTCGGGTCGGATTCCAGATAGTCTTGGAAACTTAGTGTC GCTTGTGCATATAAGCCTTCACACGAATAATTTGTCAGGTATGATTCCTTCGTCGTTGGGTAATCTGTCCAACCTCGCCACACTTCATATGTACGGAAAT CAACTCAAGGGGTCCATTCCTCCTGAACTAGGCAACCTGAAAGAGCTAACGAATTTGGATTTGAGTGCGAATCAGATCAACGGTCCGATTCCTTCGTCAT TTTCCCAAATGAGAAACATGGAAGAGTTGTTCCTTTCTGATAACCAACTCTCAGGTTCTATCCCTCTGGGGATCGGAAACCTGCCGAAGCTCACTGTGTT TCAGGTTTTCGAAAACCAGCTGACTGGTACAATCCCTTTTGACATTTGCCTTGGCGGGTCTCTTCAGAGGTTTGGAGTTAGGAACAATCGACTTTCAGGT CCGATCCCTGCAAGTTTGAGAGACTGCTCAAGCTTAGAGAGAGCTTTTTTCGACGGTAATCAACTCACAGGAAACATTACGACTGTGTTCAATGGCATCT ATCCAAAACTGGAACAGGTAGGATTGAGCCAGAATAACTTCTACGGTGAGATCTCTTCCAACTGGGGTAATTGCTGTCCAAAGCTCTCTAGGTTGGAGAT GGCAGGGAACAGAATTACTGGTTCGTTACCTCCTCGCCTTGGAAACGCAATTCGGCTTCAGGCACTGGATCTTTCCTCAAACTGTTTGGTTGGAGAAATC CCAATAGAGATATCGAATTTGGTTTGTCTCACGAAACTCGATCTCTCTTCGAATCAACTCTCCGGTCCTCTACCTCAAGATCTAGGAATGCTCGCTCAAC TTTTGTCTCTCGACGTGTCCTCCAACAACTTAAGCAAGTCGATCCCCGATGGGATAGGAAGCTTCAAGAATCTTTACTCCTTGAATTTAAGTAAGAATGA ATTCAATGGATCAATCCCAGCTGACATATCGAATCTGAATCAACTGTCTCAGCTCGACTTGAGCAAGAACATGTTAACAGGAGAAATTCCTGCCGGATTT TCCAAGCTTCAGGTTCTGGTGATCATGAACCTGTCGAGAAACCAGCTCACAGGACTCATCCCAGACAGTCTAAACAAACTTGTCGGGCAGGTTGACTTTT CCTACAATAAGCTAACCGGTCCCATCCCCGATTTTCAGGGAAACTTATCTTTTCTTGCGTTGCAAGGAAATGAAGGACTCTGCAGCTTCCACACTCCAAA TATCAGTTTTGTTTCCTCTTCCATCCCAAGCTGCAAGCTACAAACCCATGGGCTGAAATCATGGACCAAGATTCTGATAATTACCGGAGTGTCCACAGCA TTGTCGCTCATCATTATATGGAGCTGCTGTACAATCTGGGGGACAAGGAGGAGGAGAACAAGTTGTGATGATGAGGAGGAGAAGGCAAAGACGACGACTT TATGTTCTCTTCAATCATCGGAGGAGGGAAGGCACTCTACGAGGAAATCATCAAAGCCACCAACGACTTCAACGACATCGATTACCTGA
AA sequence Show only first row Show all	>Lus10005017 pacid=23156363 polypeptide=Lus10005017 locus=Lus10005017.g ID=Lus10005017.BGIv1.0 annot-version=v1.0 MAYLPSFSLLAIIILLYPLTISSANNHPQEVEALLQWKATLTKTHHAMDTSWTHLRSPCTSWYGVGCNKAGRVHRLNLSVSGIQGSTFQHFPFHSLPKLS YIDLDQNELSGPIPPQLSNLSNHLVYLDLSENQFSGTIPPVIGLLEHLNTLHLADNQLVGHIPEELSQLSRLQDLALYNNGLTGSIPASLGNLSNLEWLY IYNNSLSGSLPPELGKLSELVELYTDQNNLIGSIPSSYGKLRKLNLFFAFKNRLSGRIPDSLGNLVSLVHISLHTNNLSGMIPSSLGNLSNLATLHMYGN QLKGSIPPELGNLKELTNLDLSANQINGPIPSSFSQMRNMEELFLSDNQLSGSIPLGIGNLPKLTVFQVFENQLTGTIPFDICLGGSLQRFGVRNNRLSG PIPASLRDCSSLERAFFDGNQLTGNITTVFNGIYPKLEQVGLSQNNFYGEISSNWGNCCPKLSRLEMAGNRITGSLPPRLGNAIRLQALDLSSNCLVGEI PIEISNLVCLTKLDLSSNQLSGPLPQDLGMLAQLLSLDVSSNNLSKSIPDGIGSFKNLYSLNLSKNEFNGSIPADISNLNQLSQLDLSKNMLTGEIPAGF SKLQVLVIMNLSRNQLTGLIPDSLNKLVGQVDFSYNKLTGPIPDFQGNLSFLALQGNEGLCSFHTPNISFVSSSIPSCKLQTHGLKSWTKILIITGVSTA LSLIIIWSCCTIWGTRRRRTSCDDEEEKAKTTTLCSLQSSEEGRHSTRKSSKPPTTSTTSIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	0	1
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	1.4	0.9641
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	1.4	0.9464
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	2.4	0.9416
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10014347 [exp]	2.8	0.9242
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	2.8	0.9407
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	3.9	0.9403
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	4.2	0.9241
AT5G51160			Ankyrin repeat family protein ...		Lus10029007 [exp]	6.2	0.8960
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	6.9	0.8939
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	7.7	0.9396

Compare expression of checked genes

Lus10005017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.