Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12410 270 / 6e-88 THUMP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019037 [exp] 583 / 0 AT5G12410 410 / 8e-143 THUMP domain-containing protein (.1) Lus10023158 [exp] 44 / 0.0002 AT1G09290 325 / 4e-109 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254600 [exp] 396 / 4e-137 AT5G12410 416 / 4e-145 THUMP domain-containing protein (.1) Potri.009G049700 [exp] 387 / 1e-133 AT5G12410 420 / 1e-146 THUMP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02926 [flax] [poplar] THUMP THUMP domain
Representative CDS sequence Show only first row Show all	>Lus10005018 pacid=23156368 polypeptide=Lus10005018 locus=Lus10005018.g ID=Lus10005018.BGIv1.0 annot-version=v1.0 ATGGCGACGGACAACGCAGCGAGCAAGGGCAGCAAGAAGCGGAAGCAATACCTTCCTCACAACAAACCGGTTAAGAAGAAGGGCTCCTACCCATTACATC CAGGAGTTCAAGGTTTCTTCATCACTTGTGATGGTGGCAGAGAGCGCCAAGCTTGCTTTGAAGCCATCAACGTTATCGACACTTTCTATGATGAGCTAGT CAATGGGACTGGTGGCAATGTGAAGATCTCCGAGCTGTCGAGTAAACCAGTGAACAAAAAGATTAAGTTTGCGTATTCAGACGATGAAGAGGAGGAAGGT GATGATGATAAAGATGTGGTGGAGGAGAAGGAGAATGGCAATGGGGAAAAGGTGAAAGTAGAAGATAAATCCGAAGGCAATGATGTCAAATGTGAGACTC AGTCGAATGGAGAAACTATTGTTCCAGCTGTGGGTACTACTGAGAGAAACAAAGACGAAACGGAAGAGAAGACCAACAATGAGGAAGAGGCAAGCAAAGA AGCTCCAGAGCCTCCAGTGAAAAAGCAATGTGTTGAAACAAAGGTTTCGAAAGGTGCTAGCACTGAGAAAGCGTCAGAGAAATCTATTGACAAGCTGATA GAGGAAGAGCTCAAAGAACTTGGCGACAAAAGCAAGAGACTTCTAGTCAATCTAGATTCAGGCTGCAATGGTGTTGTTTTCGTTCAAATGCGCAAGAGAG ATGGAGACCCTTCTCCCAAGGACGTTGCGGAACGCATGATGACAAGCGCTGCATCGACGAGGAAACACATGTCAAGGTTTCTCTTGAGACTGTTGCCAAT CGAGGTATCCTGCTATCCCTCGGAAGAAGAGATTTCAAGAGCAGTCGCACCAATCTTCGCAAAGTATTTCCCCGCAGATGCTTCCGAGCCACAGAAGTTT GCAGTGATGTATGGAGCCAGGGCGAATAGTGGACTCGACAGAGCGAAGGTTATAAACGCAGTGGCGAAATCAGTGCCTGCACCCCACAAAGTTGATCTCA GCAATCCCGACAAGACAATTGTCGTCGAAGTCGTCAAGACGGTTTGCTTGATTGGGGTTGTTGAGAAGTACAAGGAACTGGCGAAGTATAACCTCAGGCA GCTCACTTCTCCTCCTCCAACAACCATGGAGACTAAAGCAGAGGCCAATTAG
AA sequence Show only first row Show all	>Lus10005018 pacid=23156368 polypeptide=Lus10005018 locus=Lus10005018.g ID=Lus10005018.BGIv1.0 annot-version=v1.0 MATDNAASKGSKKRKQYLPHNKPVKKKGSYPLHPGVQGFFITCDGGRERQACFEAINVIDTFYDELVNGTGGNVKISELSSKPVNKKIKFAYSDDEEEEG DDDKDVVEEKENGNGEKVKVEDKSEGNDVKCETQSNGETIVPAVGTTERNKDETEEKTNNEEEASKEAPEPPVKKQCVETKVSKGASTEKASEKSIDKLI EEELKELGDKSKRLLVNLDSGCNGVVFVQMRKRDGDPSPKDVAERMMTSAASTRKHMSRFLLRLLPIEVSCYPSEEEISRAVAPIFAKYFPADASEPQKF AVMYGARANSGLDRAKVINAVAKSVPAPHKVDLSNPDKTIVVEVVKTVCLIGVVEKYKELAKYNLRQLTSPPPTTMETKAEAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12410			THUMP domain-containing protei...		Lus10005018 [exp]	0	1
AT5G08320			unknown protein		Lus10010178 [exp]	2.0	0.8657
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	2.8	0.8761
AT5G51170			unknown protein		Lus10035151 [exp]	3.0	0.8706
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009019 [exp]	3.9	0.8635
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	3.9	0.8776
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	4.9	0.8593
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	5.9	0.8615
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	6.7	0.8486
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	7.9	0.8580
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	8.9	0.8548

Compare expression of checked genes

Lus10005018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.