Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50460 607 / 0 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 577 / 0 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT2G19860 484 / 9e-168 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT4G29130 474 / 3e-164 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT1G47840 394 / 6e-133 HXK3 hexokinase 3 (.1) AT4G37840 276 / 7e-87 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019038 [exp] 814 / 0 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10038287 [exp] 484 / 5e-168 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10037588 [exp] 481 / 9e-167 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 464 / 8e-160 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 446 / 5e-153 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10024336 [exp] 431 / 4e-147 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10002041 [exp] 421 / 4e-143 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10025815 [exp] 422 / 5e-142 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10011584 [exp] 228 / 1e-68 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254800 [exp] 706 / 0 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 687 / 0 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.018G088300 [exp] 499 / 1e-173 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G190400 [exp] 474 / 7e-164 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.005G238600 [exp] 429 / 1e-146 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.007G009300 [exp] 338 / 6e-111 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10005019 pacid=23156353 polypeptide=Lus10005019 locus=Lus10005019.g ID=Lus10005019.BGIv1.0 annot-version=v1.0 ATGGGGAAGTTGGCGGTCGGGGTGGCGGTTGTGGTGGCGGTGGCGACTTGTGCGGTGGCGGGAGTGGTGGTGGGGAGGCGGATGAAGAGTCGGAGGAAGT GGAGGAGGGTTATTGGAGTTTTGAGGGAGTTGGAAGAGTCTTGTGAGACTCCAGTCGGGAGGCTGAAGCAGGTGGTTGATGCTATGGCTGTGGAAATGCA TGCTGGATTGGCATCTGAAGGAGGGTCCAAGCTCAAAATGTTGCTCACTTTTGTGGACCGTTTGCCGACTGGGAGTGAGATAGGAACTTATTATGCTCTA GATCTTGGCGGTACTAATTTTAGGGTGTTGCGGGTTCAGCTAGGAGGTACACGGTCCTCAATCTTGTTGAAAGATATTAAAAGGAAACCCATCCCTCAGC ACTTGATGACCGGCACAAGTGAGACCCTCTTCGACTTCATTACATCAACACTGAAACAATTTGTTGAACAAGATGAAACTGTGTCTGAGCTCGCTCCGTC TTCAACAAGGGAGCTAGGGTTTACATTCTCTTTTCCAGTTAAACAGACTTCTATACGTTCTGGCGTCCTTATTCAATGGAACAAAGGGTTTTCCATTCAA GATATGGTTGGATGTGAAATTATTGGACGTCTACAAGAAGCACTGGTGAAGGAAGGTTTAGATATGTGTGCTTCAGTGTTGGTGAATGATACTGTCGGAA TATTATCCCTTGGACACTATCATGATGCTGATACTGTAGCTGCTGTTAAAATTGGAACTGGTACTAATGCCTGCTATATGGAGCGGGCCGACGCGATCAT TAAATGTCAAGGACTCCTTACATCTTCCGGAGGCATGGTGGTCAACATGGAATGGGGAAATTTCTGGTCGTCTCATTTGCCAAGAACAATTTACGATGCT GATCTGGATTTGGAAAGTCCTAATCCAAACGACCAGGGTTTTGAAAAGATGATATCTGGAATGTATCTTGGTGACATTGTCAGGAGAGTACTACTCAGAA TTTCTGAGGAGTCGGATATCCTCGGACCTGTCACGTCCAAATTATCGACTCCGTTTGTGCTCAAAATGCCATCAATGGCGGCAATGCACGAGGATAAAAC TCCCGAGTTGAGGGTAGTGGCTGCTATCTTAAAAGACAAGCTGGAGATCCAAGACGTTCCGCTAAAGGCAAGAAAGCTCGTCGTAAGACTATGCGACATA GTCACTCGAAGAGCCGCTCGGTTAGCAGCTGCCGGAATAGTGGGGATACTAAAGAAAATTGGAAGAGACGGGACGGGAGGAATCACGGGAGGAAGAAGTA GCAGAAGCGACGCGAAAATGAAAAGAACGGTGGTAGCAGTGGAAGGGAGCTTGTATGTAAGCTACATGATGTTCAGAGAGTATCTGCATGAAGCCTTGAA CGAGATATTGGGCGATGACGTGGCACAACATGTCGTTCTTAGGCCGACAGAAGACGGGTCTTGTGTCGGAGCAGCTCTTCTCACGGCGTTGCATTCTTCT TCTTCATTGTCGCCGGAGGAGATTCAGCAGATTCAGCGGTAG
AA sequence Show only first row Show all	>Lus10005019 pacid=23156353 polypeptide=Lus10005019 locus=Lus10005019.g ID=Lus10005019.BGIv1.0 annot-version=v1.0 MGKLAVGVAVVVAVATCAVAGVVVGRRMKSRRKWRRVIGVLRELEESCETPVGRLKQVVDAMAVEMHAGLASEGGSKLKMLLTFVDRLPTGSEIGTYYAL DLGGTNFRVLRVQLGGTRSSILLKDIKRKPIPQHLMTGTSETLFDFITSTLKQFVEQDETVSELAPSSTRELGFTFSFPVKQTSIRSGVLIQWNKGFSIQ DMVGCEIIGRLQEALVKEGLDMCASVLVNDTVGILSLGHYHDADTVAAVKIGTGTNACYMERADAIIKCQGLLTSSGGMVVNMEWGNFWSSHLPRTIYDA DLDLESPNPNDQGFEKMISGMYLGDIVRRVLLRISEESDILGPVTSKLSTPFVLKMPSMAAMHEDKTPELRVVAAILKDKLEIQDVPLKARKLVVRLCDI VTRRAARLAAAGIVGILKKIGRDGTGGITGGRSSRSDAKMKRTVVAVEGSLYVSYMMFREYLHEALNEILGDDVAQHVVLRPTEDGSCVGAALLTALHSS SSLSPEEIQQIQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Lus10005019 [exp]	0	1
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	4.2	0.7585
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	13.3	0.7815
AT5G17510			unknown protein		Lus10024530 [exp]	23.2	0.7277
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	35.5	0.7412
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10036348 [exp]	43.1	0.7405
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	69.1	0.7260
AT1G27435			unknown protein		Lus10041533 [exp]	73.5	0.6914
AT5G66580			unknown protein		Lus10000739 [exp]	78.1	0.6906
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	79.8	0.7044
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10025117 [exp]	89.2	0.6895

Compare expression of checked genes

Lus10005019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.