Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43020 705 / 0 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 650 / 0 ATPAO3 polyamine oxidase 3 (.1) AT1G65840 508 / 6e-178 ATPAO4 polyamine oxidase 4 (.1) AT3G13682 160 / 1e-42 LDL2 LSD1-like2 (.1) AT4G16310 157 / 5e-41 LDL3 LSD1-like 3 (.1) AT1G62830 152 / 1e-39 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 149 / 1e-38 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT5G13700 132 / 1e-33 ATPAO1, APAO polyamine oxidase 1 (.1) AT4G29720 81 / 3e-16 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029804 [exp] 729 / 0 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10020726 [exp] 728 / 0 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10001044 [exp] 459 / 1e-162 AT2G43020 439 / 2e-154 polyamine oxidase 2 (.1) Lus10024311 [exp] 188 / 1e-51 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10033928 [exp] 187 / 3e-51 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10015996 [exp] 152 / 2e-39 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 149 / 2e-38 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10037885 [exp] 147 / 1e-37 AT3G13682 969 / 0.0 LSD1-like2 (.1) Lus10017464 [exp] 146 / 2e-37 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055300 [exp] 716 / 0 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 709 / 0 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.004G075800 [exp] 514 / 0 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 513 / 3e-180 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.002G027100 [exp] 183 / 9e-50 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.005G235400 [exp] 182 / 1e-49 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.008G035200 [exp] 146 / 1e-37 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 144 / 5e-37 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.010G227200 [exp] 143 / 1e-36 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.011G127600 [exp] 141 / 7e-36 AT3G13682 959 / 0.0 LSD1-like2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10005021 pacid=23156357 polypeptide=Lus10005021 locus=Lus10005021.g ID=Lus10005021.BGIv1.0 annot-version=v1.0 ATGGAGTCTAGATTCAGGAGCAATCGCAATCAATTGAACAGAGATGTTTGCTATTCGAGTAGCGGGAAAAGACAAGGAGGTTCACCATCCGTTATTGTGA TAGGCGGTGGTATGGCTGGGCTCGCTGCTGCTCGTGCTCTCCATGATGCAGAGTTTCAGGTGGTTGTGTTGGAATCACGAGACAGGATAGGTGGACGAGT TCATACAGACTTCTCATTTGGCTTCCCTCTTGATCTGGGTGCATCATGGTTGCATGGGGTTAGCGATGAGAATCCTCTGGCACCGCTGATTGGGAGATTG GGGTTGCCATTGTACCGAACCAGTGGTGATAATTCAGTGCTGTATGACCATGATCTGGAAAGTTATGCACTCTTTGACATGGAAGGGAATCAAGTTCCAC AAGAATTGGTCACCAAGGTTGGGGAATCATTTGAAGAAATCCTAGCACAGGCGGTCAAAGTAAGAGAGGAACAAGACACAGACATGTCCATTCACAAAGC CTTCTCTATTATTTTCGAAAGAAGGCCTGATTTGAGGCTGGACGGTCTTGCCCATGATGAAGTACTGCTTCCAGGTGGACATGGACTCATGGTCAGAGGT TATGTATCAGTAATAAACACTCTCGCAAAGGGACTTGATATCCGTTTAGGGCATAGGGTACAAAGTATCATAAGACGTCATAATGGTGTGAAGGTAACAA CGGAAAATGGGAGGACATTTAAAGCAGATGCTGTCGTGATTGCTGTGCCTCTTGGAGTGCTGAAATCGAAGACAATTACCTTCGATCCTAAATTACCACC CTCGAAGGAGGAAGCCATTGACGGAATTGGAGTAGGAATCGAGAACAAGATTGCTCTACACTTCGACAATGTGTTCTGGCTGAATGTGGAGTTCCTAGGA GTTGTGGCGGACACTTCTTACGGGTGCAGCTACTTCCTAAATCTTCACAAGGCTACTGGTCACCCTGTTCTTGTGTACATGCCAGCTGGACAGCTCGCAA GAGATGTCCAGAAAATGTCCGATGAAGCTGCTGCTAATTTTGCTTTCTTGCAACTCAAGAGGATCCTTCCTGATGCATCAGCTCCGATTCAGCATCTGGT ATCTCACTGGGGAACAGACATCAACTCCCTTGGTTCCTACAGCTATGATTTAGTGGGGAAACCACATGAGCTGTATGAAAGGCTAAGAGTCCCAGTTGAT AACATGTTCTTTGCTGGTGAGGCAACAAGCATGGACTTCCCGGGATCTGTCCATGGTGCATACTCCACTGGACTAATGGCAGCGGAAGATTGCAGGATGC GAGTTCTGGAAGGATATGGGGAGGTGGATTTGTTCCAGCCAGTCATGGGCGGCGAGGGATTAGTATCGATCCCGATCAATATCTCGCGGCTGTGA
AA sequence Show only first row Show all	>Lus10005021 pacid=23156357 polypeptide=Lus10005021 locus=Lus10005021.g ID=Lus10005021.BGIv1.0 annot-version=v1.0 MESRFRSNRNQLNRDVCYSSSGKRQGGSPSVIVIGGGMAGLAAARALHDAEFQVVVLESRDRIGGRVHTDFSFGFPLDLGASWLHGVSDENPLAPLIGRL GLPLYRTSGDNSVLYDHDLESYALFDMEGNQVPQELVTKVGESFEEILAQAVKVREEQDTDMSIHKAFSIIFERRPDLRLDGLAHDEVLLPGGHGLMVRG YVSVINTLAKGLDIRLGHRVQSIIRRHNGVKVTTENGRTFKADAVVIAVPLGVLKSKTITFDPKLPPSKEEAIDGIGVGIENKIALHFDNVFWLNVEFLG VVADTSYGCSYFLNLHKATGHPVLVYMPAGQLARDVQKMSDEAAANFAFLQLKRILPDASAPIQHLVSHWGTDINSLGSYSYDLVGKPHELYERLRVPVD NMFFAGEATSMDFPGSVHGAYSTGLMAAEDCRMRVLEGYGEVDLFQPVMGGEGLVSIPINISRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10005021 [exp]	0	1
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	6.3	0.6834
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	11.9	0.6764
AT4G32600			RING/U-box superfamily protein...		Lus10013144 [exp]	12.2	0.5860
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	20.1	0.6351
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	23.4	0.6699
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	28.1	0.6650
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10037562 [exp]	30.2	0.6040
AT2G36430			Plant protein of unknown funct...		Lus10035569 [exp]	32.9	0.5681
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10005766 [exp]	33.7	0.6609
AT2G19130			S-locus lectin protein kinase ...		Lus10039732 [exp]	42.2	0.6571

Compare expression of checked genes

Lus10005021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.