Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12430 700 / 0 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 523 / 4e-166 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT1G02650 103 / 9e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02100 99 / 3e-21 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT3G58620 93 / 5e-19 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT5G65160 90 / 4e-18 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G78120 89 / 6e-18 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 89 / 1e-17 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G62570 88 / 1e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G53300 79 / 2e-14 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019041 [exp] 2052 / 0 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035427 [exp] 554 / 4e-179 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031042 [exp] 428 / 2e-130 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031041 [exp] 141 / 1e-38 AT2G41520 128 / 5e-35 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10002438 [exp] 102 / 5e-22 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10028154 [exp] 86 / 1e-16 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 85 / 3e-16 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10026498 [exp] 81 / 2e-15 AT5G03160 576 / 0.0 homolog of mamallian P58IPK (.1) Lus10019928 [exp] 81 / 3e-15 AT5G03160 637 / 0.0 homolog of mamallian P58IPK (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050200 [exp] 968 / 0 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 959 / 0 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.006G047700 [exp] 630 / 0 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.016G043900 [exp] 620 / 0 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.002G094800 [exp] 90 / 4e-18 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G166300 [exp] 90 / 6e-18 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G122300 [exp] 86 / 7e-17 AT4G02100 637 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.007G091200 [exp] 86 / 8e-17 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G197300 [exp] 82 / 8e-16 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.011G111500 [exp] 82 / 1e-15 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10005022 pacid=23156351 polypeptide=Lus10005022 locus=Lus10005022.g ID=Lus10005022.BGIv1.0 annot-version=v1.0 ATGAATTCATCCGGCTTCGGCAATTCGAATCCCGCTAGCTACGGGGAGAGCAACGTTAACATGAGCTTCAATTCCACCTCCGCTGGTCGCGGAACTGGTC ATCATCATCATAATAATAATAATAATAAGGGCGTTTCCAAGCCTAGACTGGTGAAGGTGAGAAGGCAATTGAGTGTCCAGAATCCCAAAACGGAATCCGG TTGGCCGCCTGGTCCCGGTGCAAATCCCTTCCGACCACCGCCGCCGCCGCCACCTGAAGTTTCTTCTTCGGGGTTTGTGTTTGGGGCGTGTAGGAGTAAT TCTCTAGGGAGAATGAACATGGAGAAAGGAATTCTTGATGAAATGAAGAGTTTGAACATTGGGAGCGGTGGCAATGTGGAGTCTTCTTTACTTCCTGATG AGTTGAGCAAGAAGCTCAACATTGGAGGAGAGGTTAGGCCTCCAGGTAAATTTACATTCAATGTGGATTCTGCAAACAGGCTTCATAATCAGATGAGTAG TTTGAACATTATGGATTCTTCGGGTGTTCGCGTTACTAATCATGTTAGGAAGGATGATTTTGGGATTGGGAGAAAGGAAAAATCTGTGCTTCAAGAAGAA ATTGAGAACAAATTGTTGGATGGCATGAGAAATAAGTTGAATATTGGAAGTGCAATGGGACAACAACCAGCTGGTTTAAAAGACTCATCAAAAGTTTCTT CTTCCAGAATTTTTGGGCAAGATGTGGATACTGGAAATAAGAATCCTTTTAGGGGAGATCGTAGTCACGTTCCTTTAAGCCAACCAAAAGTTAATGCACC ACAGGCTGGAGTTGCAGCCTCATCGTCTGAGTCATTTTCATTTGGTGGTGTTCCCTTGTCCGAGGGTGCGAATCCAAAAGATGGGGGAGTGCCTTTTGTA GAATTCAAGACTCCTAATCCAAAAGTAGGTGCATTAACTGGCGTGAATCACAAGGTTGAGTTCAGTGCCAAGCCGAAAGACTCGAAACTTAAGAAGAGAA GGAGTAAGTTAAAGCATTCTACAGCGGTGCATCTATGTACTGGGCAGGATTACAACTCCAAGGGTGAAGCCTCTGAGGTTTCTGACTCCTATTCACCAAT GGATATTTCTCCATATATGTTATCTGACACTCGACGTTCCAGGGAATCATCAGTTGCATCAGAGGAGTCCTTTAGCACCAGCAACCAGTTCGCATCAACC GAGTCAGACCAGCAAGGAATTTCAAGATACTACTCAATGGAAGACCTGGTTGGTGCAACGGAACGGATGGATGTAAATACAGCCTCGACAGAGGAAGCAT CTGATCACTGTTCTGGTAAAGATCATGATGCTGATGGTGATTCCCAAGATGATTCTGTTTCTGGATTTGAAGCTGAAAGCTTTAAATCTGAAAATGAAGA AATAGATTCCATCAGCGGTGTTGTTTATTCAAGAGAACAGGAGGCTAGCTCCAGCAAGCACAGTGGGAGACAAGATTCTGAAACGATGACTCAATTCTAT TCTGCTAATTGTTCAGAAGATTCAGGTGCTTCAGGTTTCACATTCGCTGCCTCTTCTACTGCACAGTCATCTTTGAAACCTCACCCTAAGAAGAAAAATC TTTCTTTGAACACAAAGGTCCCGTTTGCATCCTCCTCATTTAAGTTGACTTCAGCCTCTGGAGCTTCATCGCTTTTGTCCCCGCTGATGTCCCCAGCCAA TGATAGTAGAAGTGGTCTACCCAGCCCATCATTGCTTTTGTCCCCTTCTATGAACAGCAGAAGTGGTTTACCCAGCCCAATGCTTTATTCTCCTTCTATG AACAACAGAGGTGGTTTACCCAGCACTTTGCCAGCGGTTGGTGATAATTCAGAGATACTTAGAGGGAAAGAAATCAAGCAAGATTCTAATATTCCATCTG CTGCATCAGTTGCGGCCCAAGAAGCTTGTGAAAAATGGCGGTTGAGAGGGAATCAAGCATATAAAACTGGGGAACTATTGAGAGCAGAAGATTGTTACAC ACAAGGATTGAATTGTATACCTAAAACTGAGAAGGCTAGATGCTGCCTTAGAGCTTTGATGCTCTGCTATAGTAATCGTGCAGCAACAAGGATGTCTATG GGGAGAATGAGAGATGCACTGGAAGACTGCAAGACATCTTCTGGGATTGATCCCAATTTCCTCAGAGTACAACTTAGAGCTGCAAGCTGTTACCTTGCCT TGGGTGAAGTTGAAAATGCATCAGATTTTTTCAAGAAGTGCTTGCAACTAGGAAGTGATGTATGTGTGGACAGGAAGATTGAAATAGAAGCCTCCGAGGG CCTACAGAAGACGGAGAAAGTGACGGAGTGCATACAACGATCTGCCGAACTCTTGGAAAGAGGAACACTGAATGATGCAGGCACAGCTGTGGAAGTTATT TCTGAGGCTTTACTCATAAGCCCATTTGCTGACAAGTTAGTTGAAATGAAAGCGAAGGGCCTTTTTGCGCTTCGCAGGTACGAAGAGGTAATTCAGTTGT GCGAGCAGACTTTTGATTCAGCAAAAAAGAACTCACCTGCAGTACCTGCTGATTATGATCCAATGCATGCTGATCCGTCTGCACTTAAGTGGGAAACTTC CTTTAGGCTTTGGCGCTGCCGCCTATCTTTCATGTCATACTTCTATCTTGGAAAGCTGGAGGATGCCATTAATTCATTGGAGAAACACGCGGAACCGAAT TCTGCTTCTGGCCACAGTCAATCGAAATGTGATAGCAGCTATCTGGAGAAATTAATACCATTGGCTTCTACGACTCGAGAATTGTTACACCATAAGATTG CAGGAAATGAAGCATTTCAAAGAGGAAAACATTCTGAAGCTATTGAACACTATACTGCCGTGCTGTCACGTAATGTGGAGTCACTGCCTTTTGCAGCTAT TTGCTTCTGTAATCGAGCAGCTGCTTACAAGGAGTTGGGGCAAATGACTGATGCTATTGCTGACTGCAGCCTTGCAATAGCACTTGATGGCAATTATCTA AAGGCAATTTCTAGACGGGCCACTCTATATGAGATGATTAGAGATTATGGGCAGGCAGGTCATGATCTTGAGAGACTGGTATTTGCACTCGCAAGACAGG CAGATGATAAAAACAACCAGCTTGGACAAGCTGAGGGGTCGACGAACTTGCTAAATGATCTAAGACAAGCTCGTCTTCGTCTTGCTAACATGGAAGAAGA AGACAGAAAAGATATTCCATTGAATGCATATCTCATCTTGGGTGTTGAGCCTTCTGCATCAGCCGCAGAAATTAAGAAAGCGTATCGGAAAGCTGCTCTG AGGCATCATCCTGACAAGGCTGGTCAATCGTTGGCGAGGGGTGAAAATGGAGATGATGGGCTTTGGAAGGAGATAGGAGAAGAAGTTCATAAGCATGCAG ACAGACTTTTTAAAATGATTGGAGAGGCTTATGCAGTCCTTTCTGATCCCGCAAAGCGGTCGCAATATGATCTGGAAGAAGAAATGAGGAATGTCCAAAA GAGACGCAGTGGAAACAGCACATATAGAGCATATACTGACACTCACGGCTCTCAGTTCGAAAGAGGCGGTGGCTCCAGGCGACACTGGAGAGAAGCTTGG AGAGCTTATGGCCGATAA
AA sequence Show only first row Show all	>Lus10005022 pacid=23156351 polypeptide=Lus10005022 locus=Lus10005022.g ID=Lus10005022.BGIv1.0 annot-version=v1.0 MNSSGFGNSNPASYGESNVNMSFNSTSAGRGTGHHHHNNNNNKGVSKPRLVKVRRQLSVQNPKTESGWPPGPGANPFRPPPPPPPEVSSSGFVFGACRSN SLGRMNMEKGILDEMKSLNIGSGGNVESSLLPDELSKKLNIGGEVRPPGKFTFNVDSANRLHNQMSSLNIMDSSGVRVTNHVRKDDFGIGRKEKSVLQEE IENKLLDGMRNKLNIGSAMGQQPAGLKDSSKVSSSRIFGQDVDTGNKNPFRGDRSHVPLSQPKVNAPQAGVAASSSESFSFGGVPLSEGANPKDGGVPFV EFKTPNPKVGALTGVNHKVEFSAKPKDSKLKKRRSKLKHSTAVHLCTGQDYNSKGEASEVSDSYSPMDISPYMLSDTRRSRESSVASEESFSTSNQFAST ESDQQGISRYYSMEDLVGATERMDVNTASTEEASDHCSGKDHDADGDSQDDSVSGFEAESFKSENEEIDSISGVVYSREQEASSSKHSGRQDSETMTQFY SANCSEDSGASGFTFAASSTAQSSLKPHPKKKNLSLNTKVPFASSSFKLTSASGASSLLSPLMSPANDSRSGLPSPSLLLSPSMNSRSGLPSPMLYSPSM NNRGGLPSTLPAVGDNSEILRGKEIKQDSNIPSAASVAAQEACEKWRLRGNQAYKTGELLRAEDCYTQGLNCIPKTEKARCCLRALMLCYSNRAATRMSM GRMRDALEDCKTSSGIDPNFLRVQLRAASCYLALGEVENASDFFKKCLQLGSDVCVDRKIEIEASEGLQKTEKVTECIQRSAELLERGTLNDAGTAVEVI SEALLISPFADKLVEMKAKGLFALRRYEEVIQLCEQTFDSAKKNSPAVPADYDPMHADPSALKWETSFRLWRCRLSFMSYFYLGKLEDAINSLEKHAEPN SASGHSQSKCDSSYLEKLIPLASTTRELLHHKIAGNEAFQRGKHSEAIEHYTAVLSRNVESLPFAAICFCNRAAAYKELGQMTDAIADCSLAIALDGNYL KAISRRATLYEMIRDYGQAGHDLERLVFALARQADDKNNQLGQAEGSTNLLNDLRQARLRLANMEEEDRKDIPLNAYLILGVEPSASAAEIKKAYRKAAL RHHPDKAGQSLARGENGDDGLWKEIGEEVHKHADRLFKMIGEAYAVLSDPAKRSQYDLEEEMRNVQKRRSGNSTYRAYTDTHGSQFERGGGSRRHWREAW RAYGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10005022 [exp]	0	1
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10019041 [exp]	1.0	0.9697
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	3.7	0.8116
AT5G19610		GNL2	GNOM-like 2 (.1)		Lus10021771 [exp]	4.7	0.7478
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10034840 [exp]	6.5	0.7723
AT2G46520			cellular apoptosis susceptibil...		Lus10030423 [exp]	6.6	0.7223
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	8.7	0.7929
AT3G20720			unknown protein		Lus10011166 [exp]	11.6	0.7977
					Lus10040028 [exp]	13.3	0.7372
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	14.1	0.7738
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	17.5	0.7255

Compare expression of checked genes

Lus10005022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.