Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21100 317 / 1e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 263 / 7e-80 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT1G51520 226 / 5e-68 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G51950 196 / 1e-55 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G63450 178 / 3e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G05160 142 / 2e-36 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 86 / 6e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G14300 43 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 42 / 0.0008 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52980 0 / 1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019042 [exp] 810 / 0 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 541 / 0 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027350 [exp] 469 / 7e-161 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019044 [exp] 246 / 1e-73 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 242 / 2e-72 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10039575 [exp] 241 / 2e-72 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 212 / 9e-65 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 174 / 6e-49 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10012333 [exp] 152 / 8e-40 AT2G05160 488 / 2e-168 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050600 [exp] 464 / 2e-157 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 444 / 3e-149 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G050700 [exp] 266 / 2e-80 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 266 / 3e-80 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 251 / 2e-74 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 246 / 4e-73 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.014G165500 [exp] 153 / 8e-40 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.002G221100 [exp] 150 / 4e-39 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 93 / 2e-21 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005023 pacid=23156350 polypeptide=Lus10005023 locus=Lus10005023.g ID=Lus10005023.BGIv1.0 annot-version=v1.0 ATGGATCCTTGCGAGACAACAAACCTGCTCCTCTCCAGGATCAAGAGCATAGACCCGGACAACGCCTCCAAAATCCTGGGTTTTATCCTCATTCACGACC TCGGCGACCGGGAGTTGGCCAGTCTTGCCGTCGGCCACGAAAACCACTTGCTAAACTTCATTTCCAAGGCCAGGACCCACCTGAACCTTTCGTCCAACAC CTCGTCTGCAACTTCTGCCGTCCAACTCTCTTCTTCCCCTTCTTCCCCTCTCAATCCTATCTCTAGGCCTGTCTTTGGGAACTGTGCTGGAAACCCTTTC TCCTCCCACCACCACTCTTCTCCTAGGTTTGCTGGGCCGTTTCTTGATTTCTCTAGGAACAACCTTTCTCCCCAATCTTGGCCTGTCTCTGCTAATAATA GCAGCAGTAGTAGTAGCAACAATTGCAGCATTTCCCTAAGTCCCAAATCAAGCCCCTTTCTGTCTTACGACAGTATACGCGCTGCTGGTCCCGTGAAGTC TCCCGCTTTCTCCAAGTCTAGCGGCAATGCCGATTCTTCAAGCAACGATCCCCTTGAAGATTACCCCTTCGACGAGTATCTCTCCTTTCTCGACGATTCC TCTTCCAGGAACGACGACTTTGTCGACCCTGCTGCGGATTCCCAGCTGCACAGGAGGAGGTTTTCGGAGAGCGATGCATGCCCCGATGATGAAGATGATG CTTTTGGAATTGGGTATAATAGACCATGTTTGAATAGTCGTGTTATGGTTGGCTCACCGAGGGAAATGGGGAGTCTTTACTTGCAACAGCATGAAGGGAT GATGAGGCTGAAGGCTGCTCATCAGCAACAGCAGCAGAGACTAGGTTACAGCAAGTATATGAACTTCTTGTTGCACCAACATAATGATCAACATAGATTG GGTGCCGCAGCAGCAATCAACCGTGAGGAGTTCCACAAGTTTGGCCGCTTTTGTACTGAAAGAAATGACTTTTTTGCAATGACAATGGCGGAGAAGGCAA ATTCAGCTTCCCGTCAGATATATTTGACATTCCCTGCAGAAAGTACGTTCAGAGATGAGGATGTTTCAAATTATTTCAGCACTTTTGGGCCAGTTGAAGA TGTTAGGATCCCATATCAACAAAAGCGGATGTTTGGATTTGTAACATTTGTTCATCCAGATACTGTGAAGCTGATACTGGCCAGGGGAAATCCTCATTTT ATCTGTGATTCACGCGTGCTTGTCAAGCCTTACAAGGAAAAGGGAAAAGCTTCAAATGAGAGGCAACATCACATGCATCAACAGTTACTCGAGAGAGGAA GCTTGTCCTCGGGTTCAAGTCCTTCTGGGCTTGATGGTAGGGAGCTGTATGATCTTCCAATGGGCCCAAGAATGGGTTACAATTCACCGGAAATGATGTT GAGGAGGAAGTTAGACGAACATGCTGAGCTACAGCAAGCTATTGAACTCCAAGGAAGAAGGTTAGTAAATCTACAGCTTCCAGACTTGCGAGGTGATTTT GTACATCATCAGCGTAGCCTGTCTGTTGGTGCACCCATTTCGATGCCTTCTCCTCTCAGCCAAATAACATGCCAGAGACATGAAGTCTTAGAAGGTGAGC TTATAGTGGGTAGTTACCCTATACTCTTGTATGCGTTTGAAGTACTGGAATTCTCCGTAGACTAA
AA sequence Show only first row Show all	>Lus10005023 pacid=23156350 polypeptide=Lus10005023 locus=Lus10005023.g ID=Lus10005023.BGIv1.0 annot-version=v1.0 MDPCETTNLLLSRIKSIDPDNASKILGFILIHDLGDRELASLAVGHENHLLNFISKARTHLNLSSNTSSATSAVQLSSSPSSPLNPISRPVFGNCAGNPF SSHHHSSPRFAGPFLDFSRNNLSPQSWPVSANNSSSSSSNNCSISLSPKSSPFLSYDSIRAAGPVKSPAFSKSSGNADSSSNDPLEDYPFDEYLSFLDDS SSRNDDFVDPAADSQLHRRRFSESDACPDDEDDAFGIGYNRPCLNSRVMVGSPREMGSLYLQQHEGMMRLKAAHQQQQQRLGYSKYMNFLLHQHNDQHRL GAAAAINREEFHKFGRFCTERNDFFAMTMAEKANSASRQIYLTFPAESTFRDEDVSNYFSTFGPVEDVRIPYQQKRMFGFVTFVHPDTVKLILARGNPHF ICDSRVLVKPYKEKGKASNERQHHMHQQLLERGSLSSGSSPSGLDGRELYDLPMGPRMGYNSPEMMLRRKLDEHAELQQAIELQGRRLVNLQLPDLRGDF VHHQRSLSVGAPISMPSPLSQITCQRHEVLEGELIVGSYPILLYAFEVLEFSVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	0	1
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	1.0	0.9760
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	1.4	0.9677
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	1.7	0.9625
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	2.8	0.9513
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	4.2	0.9448
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	5.3	0.9430
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	5.5	0.9492
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	7.2	0.9374
AT1G77270			unknown protein		Lus10029729 [exp]	7.7	0.9264
AT5G67610			Uncharacterized conserved prot...		Lus10019263 [exp]	8.4	0.9157

Compare expression of checked genes

Lus10005023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.