Plant FIBer expression Database

Lus10005024 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52980 209 / 1e-68 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019043
[exp]
355 / 4e-126 AT5G52980 238 / 4e-80 unknown protein
Lus10000151
[exp]
202 / 5e-67 AT5G52980 174 / 2e-56 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G093800
[exp]
217 / 4e-72 AT5G52980 223 / 6e-74 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11712 Vma12 Endoplasmic reticulum-based factor for assembly of V-ATPase
Representative CDS sequence
>Lus10005024 pacid=23156361 polypeptide=Lus10005024 locus=Lus10005024.g ID=Lus10005024.BGIv1.0 annot-version=v1.0
ATGGATATGAGCTCTGTAGAAAGTCCATCAGATTCCCCTGGTTTGGTTGTGAAGAACAAAGATCGTATTCAATCTTTTCTCCTTTCCGCCTCCAATGAAC
CAGGCCTTCCTCAGGATTTGAAACATCTTGCATCTAGTTTGCTGTCTTTGGACAGTGTGCCCTATGTGTCTCTCCGAAGTATATGGTTGAGATCTCAGCC
GTCTAGCAGACCAGAATTGATTCTTCTCTTCTCAGGATGTGAATTTGTCTTCCCCCGCATTAAACAAAGAGAAAGGAGTCAAGAACTGAAGGCAAGGTTG
AGGAAACTTGAGGAGTTAGCGGAGAGAAAGGCCTATCAGGAGCTAGTCAAGGATATTACCCCAAGAAAAGATACGAATGAACCCTTCTCTTCTTACAAGG
ATCAGCTTGGTTTTGGTCTGCATGTTGGTCTGACCATGTTCACTGGATATTTAATTGGATATGCAGCATTCAGAGCATTGTTCGGGCGCACTCCTGCCAT
GAGCGCTGCTGGAGGAATTCTGGGACTTGTTTTTGGGATGCTTGTGGAAACCCTTCTTTTCATAATTAGAACATCTAGTAATCAAGCTCCCAAACAATAC
AAATCCACATCCAAGGTAAAGAAGCAGTAG
AA sequence
>Lus10005024 pacid=23156361 polypeptide=Lus10005024 locus=Lus10005024.g ID=Lus10005024.BGIv1.0 annot-version=v1.0
MDMSSVESPSDSPGLVVKNKDRIQSFLLSASNEPGLPQDLKHLASSLLSLDSVPYVSLRSIWLRSQPSSRPELILLFSGCEFVFPRIKQRERSQELKARL
RKLEELAERKAYQELVKDITPRKDTNEPFSSYKDQLGFGLHVGLTMFTGYLIGYAAFRALFGRTPAMSAAGGILGLVFGMLVETLLFIIRTSSNQAPKQY
KSTSKVKKQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G52980 unknown protein Lus10005024
[exp]
0 1
AT2G42910 Phosphoribosyltransferase fami... Lus10010935
[exp]
2.4 0.8751
AT2G30050 transducin family protein / WD... Lus10037571
[exp]
10.6 0.8659
AT2G27510 ATFD3 ferredoxin 3 (.1) Lus10034144
[exp]
13.5 0.8644
AT2G45010 PLAC8 family protein (.1.2) Lus10027214
[exp]
13.9 0.8496
AT1G03910 unknown protein Lus10027605
[exp]
18.0 0.8313
AT1G70730 PGM2 phosphoglucomutase 2, Phosphog... Lus10034595
[exp]
18.7 0.8627
AT4G40042 Microsomal signal peptidase 12... Lus10015793
[exp]
19.0 0.8627
AT1G07890 ATAPX01, CS1, A... maternal effect embryo arrest ... Lus10013537
[exp]
24.4 0.8638
AT2G20140 RPT2b regulatory particle AAA-ATPase... Lus10019995
[exp]
26.9 0.8278
AT2G25670 unknown protein Lus10017738
[exp]
27.8 0.8638

Lus10005024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.