Plant FIBer expression Database

Lus10005027 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10005027 pacid=23158816 polypeptide=Lus10005027 locus=Lus10005027.g ID=Lus10005027.BGIv1.0 annot-version=v1.0
ATGGACATTGTCTTCCTAATCGAGACTTTGATGAGTAAGCAATGTATGGAGGACCTGCGAACAAAAGATTCAGAACTGCTGATTCGAGATGAGAATAAAC
GAAGGCTTCGGGGAGACGGAGGAGATAAGATGGACATGGAAGATATCTCGGACCATAGGCCGTCGAAATCATCGAAGAAAACAGAGCACAACAAGTTACA
CGCTACGGCGAATCGCTTGTATGTTGGTTGGGCTGCTGAGGAGCCGGACCACAACAGCAGTTTCAGCGAGGATGTTTTGATTTCTCGAACGGTTCGACCA
CTTCCACGTCATCACTCCCGATCCCGTCCCTCCTCACAAGAACTTCCACCGCTTTGTCCCTCCGACAGAGGAGACGGCGTCGGAGGTGAAAGGAGGAGAC
GCGTCGGAGATGAAGGAGGAGACGGCGTCGATCGCGGAGGAGATGGACGGAGGAGACCTGTTTCTTTAAACGCGACTCCTGTCAAAATTTTTTTTAAACC
CGGCGACACCGCCTTTTCCGACGAGGCGCCGCGGAGGCCCTCGAGGCGACGATTCCGCGAAGATTCCGCGACGATTCGGCGACGATCCGCCTTAATCAGT
CCGCCTCGCACTAATCGCCGCGTTTCCTCTCCGCCCCGCCGATTTTTCCGCCTAGGCGGCCGCGGAGGCACGCCTTCCCGAACACTGCTCGAACCTTGCT
AA
AA sequence
>Lus10005027 pacid=23158816 polypeptide=Lus10005027 locus=Lus10005027.g ID=Lus10005027.BGIv1.0 annot-version=v1.0
MDIVFLIETLMSKQCMEDLRTKDSELLIRDENKRRLRGDGGDKMDMEDISDHRPSKSSKKTEHNKLHATANRLYVGWAAEEPDHNSSFSEDVLISRTVRP
LPRHHSRSRPSSQELPPLCPSDRGDGVGGERRRRVGDEGGDGVDRGGDGRRRPVSLNATPVKIFFKPGDTAFSDEAPRRPSRRRFREDSATIRRRSALIS
PPRTNRRVSSPPRRFFRLGGRGGTPSRTLLEPC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10005027
[exp]
0 1
AT3G27670 RST1 RESURRECTION1, ARM repeat supe... Lus10010375
[exp]
8.9 0.8956
AT1G24706 EMB2793, AtTHO2 EMBRYO DEFECTIVE 2793, THO2 (.... Lus10035106
[exp]
20.9 0.8951
AT5G49430 WD40/YVTN repeat-like-containi... Lus10016882
[exp]
23.6 0.8912
AT3G53090 UPL7 ubiquitin-protein ligase 7 (.1... Lus10008636
[exp]
27.5 0.8878
AT1G58250 SAB SABRE, Golgi-body localisation... Lus10032834
[exp]
30.8 0.8892
AT1G55325 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, R... Lus10035973
[exp]
30.9 0.8899
AT5G49430 WD40/YVTN repeat-like-containi... Lus10037748
[exp]
35.6 0.8833
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Lus10007174
[exp]
37.4 0.8865
AT1G02080 transcription regulators (.1.2... Lus10042876
[exp]
37.7 0.8774
AT3G13330 PA200 proteasome activating protein ... Lus10027111
[exp]
41.7 0.8776

Lus10005027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.