Plant FIBer expression Database

Lus10005030 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48500 209 / 3e-64 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTIVE 10, PIGMENT DEFECTIVE 312, Nucleic acid-binding, OB-fold-like protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G091700
[exp]
234 / 1e-73 AT3G48500 905 / 0.0 PLASTID TRANSCRIPTIONALLY ACTIVE 10, PIGMENT DEFECTIVE 312, Nucleic acid-binding, OB-fold-like protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10005030 pacid=23158820 polypeptide=Lus10005030 locus=Lus10005030.g ID=Lus10005030.BGIv1.0 annot-version=v1.0
ATGGAAGCAAAGGCAAGAGGAGAGAAGTACAAGATTGAGAAGCTGAGGCGAAATATTGAAATGGACGAGTATGATCTGCTACATTGGCGGCGATCTGTAG
AGGAAAGAGAAGCGCTGCTGAGAGACATAAGCTGCCGTGAAGCCCTAGGTCTTCCATTGGAGGAGCCAGGGAGGTACAAGCCAGAGAGCTTCTTTGGCAA
CCAAGGATACGATCCAGATAACCCATTGTACAGATATGATTATTGGGGAGAACCAAAGAGCTCAGAGAAGAGCAAGCAAAGAAGAATGATGGAGGCTCAC
AACAAATCAATCATAGGCAAGGGGACTGTATGGTATGAAAAATCCTACGACGATGTAGTTGAAGAGAAAATTGTAAGAGAAGCACATTCGAAAGCATCCA
CCATGAAGCAAGAAGAGGTGAAAGACGAAGAGGAAGAAGATGATGATGAAGAGTGGGATTACAGTTTTCTATATGATTCAGATGCTAACTCATCAGAAGA
ATCTGTGGTTGTGAATGGCACTGAAACTGCACGAGTATCAGAGGACGGCATGTTTGAGAATTCGGCATAA
AA sequence
>Lus10005030 pacid=23158820 polypeptide=Lus10005030 locus=Lus10005030.g ID=Lus10005030.BGIv1.0 annot-version=v1.0
MEAKARGEKYKIEKLRRNIEMDEYDLLHWRRSVEEREALLRDISCREALGLPLEEPGRYKPESFFGNQGYDPDNPLYRYDYWGEPKSSEKSKQRRMMEAH
NKSIIGKGTVWYEKSYDDVVEEKIVREAHSKASTMKQEEVKDEEEEDDDEEWDYSFLYDSDANSSEESVVVNGTETARVSEDGMFENSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G48500 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTI... Lus10005030
[exp]
0 1
AT3G04260 PDE324, PTAC3 PIGMENT DEFECTIVE 324, plastid... Lus10003577
[exp]
3.0 0.9382
AT1G71720 PDE338 PIGMENT DEFECTIVE 338, Nucleic... Lus10028726
[exp]
3.7 0.9325
AT3G56330 N2,N2-dimethylguanosine tRNA m... Lus10029044
[exp]
5.1 0.9029
AT3G18680 Amino acid kinase family prote... Lus10020884
[exp]
6.7 0.9310
AT5G65820 Pentatricopeptide repeat (PPR)... Lus10011566
[exp]
9.9 0.8920
AT3G17170 RFC3 REGULATOR OF FATTY-ACID COMPOS... Lus10017084
[exp]
12.0 0.9034
AT3G04650 FAD/NAD(P)-binding oxidoreduct... Lus10042542
[exp]
12.2 0.9154
AT3G12930 Lojap-related protein (.1) Lus10027381
[exp]
13.4 0.8860
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Lus10017100
[exp]
16.0 0.9308
AT3G25470 bacterial hemolysin-related (.... Lus10008746
[exp]
16.7 0.9254

Lus10005030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.