Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48500 667 / 0 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTIVE 10, PIGMENT DEFECTIVE 312, Nucleic acid-binding, OB-fold-like protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091700 [exp] 700 / 0 AT3G48500 905 / 0.0 PLASTID TRANSCRIPTIONALLY ACTIVE 10, PIGMENT DEFECTIVE 312, Nucleic acid-binding, OB-fold-like protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005031 pacid=23158819 polypeptide=Lus10005031 locus=Lus10005031.g ID=Lus10005031.BGIv1.0 annot-version=v1.0 ATGCTAACCCTCCAATGCCTTCCTTCCTTCTCTTTTCCTAAAACCTTAAACTCTACTAAACCCAGATTCATCTCTCCTCCTCCCAATTGCTTCTACTCCG ACGAGTTCCCTGTGGACGAGGCTTTCGTCCAGAAATTCGCTCCCAAAGATAAAGAAACAGAGGACGAAGCTCGTCGCAAGAACTGGATTGACAGAGGATG GGCTCCCTGGGAGGAAGTCCTAACCCCAGAAGCCGATTTCGCCCGCAAGTCCCTCAACGAAGGCTACGAGGTCCCTCTCAAAACCCCAGAAGCCATCGAG GCCTTCAAGGCCCTTTCCCCCAAATATCGCAAGAAGAAGATGGAAGACTTAGGGTTGACTGAGGACGACTGGTATCGCCATCAATTTGCTATTAAGGACG AATTCATTCCTGATAAGCTCGAGACCCATTGGTCGGGGCCTTTGCTTGTAAGCCACATTCCCCCCAGGGATTGGCCTCCCAGAGGTTGGCAAGTTGATAG GGCTGAGCTGGAGTTTATCAGGGAGGCTCATAAGCTCCACTCTGAGAGAGTCAGTTTGGAAGACTTGGAGGGAGCCGCCGCTACTGTGTTGGATAAGGAC CAAGTCGATTTTGATAGGTATAAGGTGTTTCTGAGGCAGTACAATGAATGGGTTGATGCTAACAAGGATAGATTGGAACAAGAGTCTTACGAGCAAGACC AGGACTATTATCCTGGCAGGAGGAAGAGAGGGAAAGACTACAAAGATGGAATGTACGAGCTCCCGTTTTATTATCCTGGACAGATATGTGAAGGAAAAGT GGTCGCCTTAACTCTTTATCAGGGAGCATTTGTTGACATTGGAGGTGTTCATGACGGCTGGGTCCCTATTAGAAATAATGATTGGTTTTGGATTCGGCAC CACATACAAGTCGGTATGCATGTCATAGTTGAAATTCTGGCAAAGCGAGATCCATATCGCTTCCGTTTTCCTATTGAGATGCGTTTTGTCTTCCCAAACA TAGATCACTTGATATTCAACCGGTTTGAGTTCCCACCTATCTTTCATCGGGATGAGGACACTAACCAAGATGAACTACTGCGCGATTGCGGAAGACCTCC TGTTCCCAGAAAAGATCCAGAAACGAAGTCACAAGAGGAGGCACTATTGTCGAATCATCCTTATGTTGACAAGTTATGGCAAATTCATGCAGCAGAGCAA ATGATGGTGGAGGATTGGGTTAAAAATCCAGAGAAATACGAGGGGAAAAAGATATCGGAGTTGACCGACGATGAGGATATTAATGAACAGAACTGCGTCG TATATGGTGAAGCGTACCACAAGAAAAGCAAACTCCCTAAAATGACAGTGAAAACAAGTGTCAAGGAACTGGATCTGGAGGCTGCGTTGGCTGAGTATGA GGCAAGTCATTTCTTCTTGCATATATTTTACTTAGTTCCACCTACAATTAGGGCTGTTTACGAACAACTGAGTCTAGCCGAACTTTACCATATTCACATT TGGCTCATTATGTTTTAG
AA sequence Show only first row Show all	>Lus10005031 pacid=23158819 polypeptide=Lus10005031 locus=Lus10005031.g ID=Lus10005031.BGIv1.0 annot-version=v1.0 MLTLQCLPSFSFPKTLNSTKPRFISPPPNCFYSDEFPVDEAFVQKFAPKDKETEDEARRKNWIDRGWAPWEEVLTPEADFARKSLNEGYEVPLKTPEAIE AFKALSPKYRKKKMEDLGLTEDDWYRHQFAIKDEFIPDKLETHWSGPLLVSHIPPRDWPPRGWQVDRAELEFIREAHKLHSERVSLEDLEGAAATVLDKD QVDFDRYKVFLRQYNEWVDANKDRLEQESYEQDQDYYPGRRKRGKDYKDGMYELPFYYPGQICEGKVVALTLYQGAFVDIGGVHDGWVPIRNNDWFWIRH HIQVGMHVIVEILAKRDPYRFRFPIEMRFVFPNIDHLIFNRFEFPPIFHRDEDTNQDELLRDCGRPPVPRKDPETKSQEEALLSNHPYVDKLWQIHAAEQ MMVEDWVKNPEKYEGKKISELTDDEDINEQNCVVYGEAYHKKSKLPKMTVKTSVKELDLEAALAEYEASHFFLHIFYLVPPTIRAVYEQLSLAELYHIHI WLIMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	0	1
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	1.0	0.9754
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	2.2	0.9621
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	2.6	0.9551
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	2.8	0.9719
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	3.5	0.9649
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	3.5	0.9660
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	6.0	0.9560
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	6.0	0.9488
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	7.2	0.9486
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	7.3	0.9548

Compare expression of checked genes

Lus10005031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.