Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01400 1125 / 0 ESP4 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1) AT1G27595 449 / 2e-138 unknown protein AT1G27590 125 / 1e-31 unknown protein AT1G27570 121 / 6e-28 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028229 [exp] 335 / 1e-98 AT1G27595 494 / 3e-161 unknown protein Lus10007230 [exp] 193 / 3e-51 AT1G27595 340 / 7e-105 unknown protein Lus10028228 [exp] 135 / 1e-34 AT1G27590 271 / 4e-91 unknown protein Lus10007229 [exp] 130 / 2e-33 AT1G27590 281 / 1e-95 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116600 [exp] 1491 / 0 AT5G01400 1348 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1) Potri.002G107400 [exp] 494 / 1e-151 AT1G27595 762 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11935 [flax] [poplar] DUF3453 Domain of unknown function (DUF3453) PF12295 [flax] [poplar] Symplekin_C Symplekin tight junction protein C terminal
Representative CDS sequence Show only first row Show all	>Lus10005032 pacid=23149023 polypeptide=Lus10005032 locus=Lus10005032.g ID=Lus10005032.BGIv1.0 annot-version=v1.0 ATGGTAGGGATGCTGAGCTCCTCCTCGAGGGAGCGCCTGGCGGGTCTTGTAGACTCCGTGAAGTCCTCCGTCGTGGATATTCCCGCCAAGCTTGACAGCT TGCGGCAGCTACGGGAAACACTGTTGGGAACTGGAGATGCTGGCTCGCTATCTGAGTTCGTCCCTAGCTTACTCGATTTGCAGGGTGATCAGCACTCTCC TGTTCGGAAATGTTCTACCGAGATAATTGGAGAAATAGGATTGAAGCACTTGGAATTCATTCCGGAAATTGTTCCCGTCTTGATGATCCTATTGGAAGAC AGTGTTCCTGCCGTGGCTAGACAAGCGATCAATTGCGGAATAAGATTGTTTCGTTCTACTCTCGTGAAAATTGCATTTCAGGGCCTTCACAAGAGTGTGC CGGATGATCTGCTAAAGTCAGCATGGTCTTCAATGCTAGAGTTCAAGGATAAAGTTTACTCACTGGCTTTTCAGGCGGGAAGCGGTGGCGTAAAGTTGTT GTCGTTAAAGTTTGTTGAAGCAGTTATTATACTCTACACGCCCGATCCCAAACTCCCTCTTGTACCTCCTAATGATGAAGGAGAGCTCTTCTTGTTTAAC ATAGCATGGTTCCGTGCACGCCATCCTGTACTAAATGTCGGTGACCTATCAATTGAAGCCAGCAGAAGACTAGCTTCACTGCTCGATCAACTAAGGCCAC CCACAGTAAAATCTCTCAGTAACTTGGTTATCATTGTTATTATTAAAAGTCTTGCTACCATAGCAAAGCAGAGACCCCTATATTTTGGACGGATAATTCC TGTCTTACTTGGTCTGGACCCTTCTAGCTCTGTTGTCAAAGGGATGTGTGCTCCAGGATCACAACTTGCTCTGAAGAATGCCTTTCTTACCTGCTTGAAA TGTACTCACCCAGTTTCTGCACCGTGGAGGGATCGTTTAGTTGGTGCCCTCAGAGAGATGAAAGGAGATGGATTGGAAGAGGAAGCTTTACGTAGAAACT TTAAGAGCAACGGAACTTTGCTGGAGGGAACGAGCAATGTGATTGTGAAGAAGGAAGATGACCAGCCAGCTCAGGCATTTGATGCCAGCATATGTGATAA ATTGGAGAGGAAAAGGTCTGGAGCAGACAGTACAGATTCAGCTGAAAGTGATGAAGTTTCGAGAAAGCGTGCGAAATCAATGCCTATTAATGTGACAGAC CCAAAGAATGGATCAGCCAGGGACCAAGTAATCCCTCAACAGAACGTCCCGTCACACGTGCCTCCCAAAGATGAAGGACAGGATGATAGTGGACCCGTGA AACAGCTTGTTGCCATGTTTGGGGCCTTGGTAGCCCAAGGTGAAAAGGCTGTTGGTTCTTTGGAGATACTTATTTCTAGCATTTCTGCTGACTTGCTAGC CGAGGTAGTAATGGCAAACATGCGCCTCCTCCCGCATATTCGAACTCAAATTGAAGGAGATAATGAGACTGTAGCAAACATGACTATTGTTGGCAGTAGC ACTCGAGCCAAGTATCCAGCCTCCTTCATAGCTGATGTTGTTTCCCTTTCAACGTCCTTTCGATCTATACTTCCACAACTAGGACCTCATGAGACTATTT CCAATGAGTTGCCATCGACGTCCCGGGAGGAGAAAGAAGTACATATTTCTGGCGGGAGTGATGATCAAACAGATGATGAAATGTTAACTACTGTCTTACC AGATTCTTCAGCCGCTATACCCAGTGTGGAGGCAGATGATTTGTCAATTTCCTCTGATCTTCCTGATGTTGAGAATCCAAAGAGTGAGATACCTGGCCTA GACTCCTCTGCACGGGATGATGGATTCTCTGAGGACATTGGTGCATCCTCACTTGTCTCTAATGACATAGAAGCTGTTAGTCAAGAGCAAGTCGCAAGTG TTGGTGCCACATCAATGTTAGATTCACTTCCATCAATATCCACTGAAAAGTCAGAGGAACTTAGCTCTAAAGCAGCCATTATAGATTCCAATAGTGTTAT GTCATCAATGTCAACCTCTACAGCTTTCCCTAGTATGGTTATCCTGCCTAAGATGGCTGCTCCAGTGGTTGACCTTGCCGATGATGAGAAAGATCAACTG CAGATGTTGGCATTTACACGTATTGTTGAGGCATATAAGCAGATAGAGCTTGCTGGCTTATCTGAAGTCCGCTTTTCCTTACTTGCTTGTCTAGGAGTTG AGAACTGGGCTAGCCAAACTATTCAAAACTTTCCAGCTTGTATGGCACACTCATTTATAGTTTTCTTTTCTCAGCTTCCTTCAGAGTTAGAGCCATGGAA GGTGCTTGAGAAGCACATATTATCAGATTATGTTAACCTGGAGGGACACGAGTTGACATTGCGTGTCCTTTACAGGCTATACAGAGAAATAGAAGAGGAG CGCGACTTCTTTTCCTCTACAACAGCTGCTTCTGTATATGATGTCTTCTTCCGCACTGTGGCTGAGACATTGAGAGATTCTTTTCCACCTTCTGACAAAT CTTTGAGTAGATTACTTGTTGAGGCTCCTTCCTTACCCAAGTCAGTGTTGAACTTGTTGGAGTCCTTATGTTGTCCTGGAAACTCTGAGAAAGATGGAAA GGTATTTCAAAGTGGAGATCGAGTCATTCAAGGACTGAGTACTGTGTGGAACTTGATTATGTCAAGGCCTCCAATTAGAGAAGCGTGCTTGAAGATCGCC TTGCAGAGTGCAAGTCATCGTGCGGAGGAAGTACGGATGAAGGCGATTCGTTTGGTGGCAAACAAGCTTTACCCACTTGCATCCGTCTCTCAACAAATTG AAGATTTTGCCAAAGAAACAATGTTGTCTGTGGTAGATGTTGAACATGTTATGGAGATCAAGGATGAAGACAAATTGATTACTGAACCACACAAGGACTC CAGTTCAGAAAAGCTGTTATCAGAGCATCAGTCAATGAACCCCAAAGTTCTTTCATGCGAAGATCAACAAACAAGTGTATCTGAATGCCATTCATCACAT TCAACTGAAGAGGCCCAGCGATGCTTGTCCTTATTTTTTGCCTTGTGCACAAAGAAGCATTCCCTCTTTCGCCAAATTTTTATAATGTACAAAAGCGCAC CAGAGGCAGTCAAGCAGGCAGTCCATATGCATATCCCTGTACTTGTCCGTACCATGGGCTCGTCCTCTGAGCTCCTTCAAATTATTTCAGAACCTCCAGA TGGGAGCAAGAAGCTTCTAATACAGGTTCTGCAAACGCTGACTGAAGGGTCTGTTCCTTCTCCAGAGCTGTTACTCACCATAAAAAGATTATACAATTCT AAGCTGAAGGATGTTGATATTCTGATTCCAGTATTGCCTTATCTACCGGGTGATGAGATCCTAGCATCTATTCCACAGTTTGTTAATCTAACTCCAGACA AGTTCCAAGCTGTTCTTCTTTGTATACTACAGAAACCACCTAATTCTTCTGGTCCTTTGCTAGCTCCATCTGAAGTCACGGATGCATGTAATGCTTGCTT CGAACAGCGGCAAATATTCACCCAGGCGGTTATCGCGAAGGTCTTGAATCAGCTGGTTGAACAGATTCCTCTTCCTTTGTTGTTTATGCGGACAGTAATA CAAGCGATAGGAGCTTTTCCGGCATTGGCCCATCGTTACGGTGGAACCCTCTTGAAAAGTGTGAATGACACAGTGCGACTAAATTTTCAGGTGGAGTTTA TCATGGATATCCTTTCTCGTCTAGTCAACAAGCAGATATGGAAATATCCAAAGTTGTGGGTAGGGTTCTTGAAGTGTGCACTGTTAACAAAGCCTCAATC TTTCAGCGTGTTGCTTCAGTTGCCTCCGCCTCAGCTTGAAAATGCACTGAACAGGACCGGAGCACTGAGAGTTCCACTAGTTGCTCATGCTAGCCAACCG AATATTAAATCTACACTACCAAGGTCTATATTGGTTGTCCTAGGGATAGCTGAACCCCAGAGCACGACTCAATCGCAACCTAGTCAACCCCAGAGCACGA CTCATTCTCAACCTAGTCAATCCCAGAGCACGACTCAATCGCAACCTAGTCAGGAGCAAACTGCCGAAACCAGCAACTCGGAGAAGGATGTGCCAGTGGA GAAACCTAGCGAGCCTTCTTCAGATGCCAGCTGA
AA sequence Show only first row Show all	>Lus10005032 pacid=23149023 polypeptide=Lus10005032 locus=Lus10005032.g ID=Lus10005032.BGIv1.0 annot-version=v1.0 MVGMLSSSSRERLAGLVDSVKSSVVDIPAKLDSLRQLRETLLGTGDAGSLSEFVPSLLDLQGDQHSPVRKCSTEIIGEIGLKHLEFIPEIVPVLMILLED SVPAVARQAINCGIRLFRSTLVKIAFQGLHKSVPDDLLKSAWSSMLEFKDKVYSLAFQAGSGGVKLLSLKFVEAVIILYTPDPKLPLVPPNDEGELFLFN IAWFRARHPVLNVGDLSIEASRRLASLLDQLRPPTVKSLSNLVIIVIIKSLATIAKQRPLYFGRIIPVLLGLDPSSSVVKGMCAPGSQLALKNAFLTCLK CTHPVSAPWRDRLVGALREMKGDGLEEEALRRNFKSNGTLLEGTSNVIVKKEDDQPAQAFDASICDKLERKRSGADSTDSAESDEVSRKRAKSMPINVTD PKNGSARDQVIPQQNVPSHVPPKDEGQDDSGPVKQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMRLLPHIRTQIEGDNETVANMTIVGSS TRAKYPASFIADVVSLSTSFRSILPQLGPHETISNELPSTSREEKEVHISGGSDDQTDDEMLTTVLPDSSAAIPSVEADDLSISSDLPDVENPKSEIPGL DSSARDDGFSEDIGASSLVSNDIEAVSQEQVASVGATSMLDSLPSISTEKSEELSSKAAIIDSNSVMSSMSTSTAFPSMVILPKMAAPVVDLADDEKDQL QMLAFTRIVEAYKQIELAGLSEVRFSLLACLGVENWASQTIQNFPACMAHSFIVFFSQLPSELEPWKVLEKHILSDYVNLEGHELTLRVLYRLYREIEEE RDFFSSTTAASVYDVFFRTVAETLRDSFPPSDKSLSRLLVEAPSLPKSVLNLLESLCCPGNSEKDGKVFQSGDRVIQGLSTVWNLIMSRPPIREACLKIA LQSASHRAEEVRMKAIRLVANKLYPLASVSQQIEDFAKETMLSVVDVEHVMEIKDEDKLITEPHKDSSSEKLLSEHQSMNPKVLSCEDQQTSVSECHSSH STEEAQRCLSLFFALCTKKHSLFRQIFIMYKSAPEAVKQAVHMHIPVLVRTMGSSSELLQIISEPPDGSKKLLIQVLQTLTEGSVPSPELLLTIKRLYNS KLKDVDILIPVLPYLPGDEILASIPQFVNLTPDKFQAVLLCILQKPPNSSGPLLAPSEVTDACNACFEQRQIFTQAVIAKVLNQLVEQIPLPLLFMRTVI QAIGAFPALAHRYGGTLLKSVNDTVRLNFQVEFIMDILSRLVNKQIWKYPKLWVGFLKCALLTKPQSFSVLLQLPPPQLENALNRTGALRVPLVAHASQP NIKSTLPRSILVVLGIAEPQSTTQSQPSQPQSTTHSQPSQSQSTTQSQPSQEQTAETSNSEKDVPVEKPSEPSSDAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	0	1
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	1.7	0.9205
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	2.2	0.9362
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	2.4	0.9338
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10037821 [exp]	4.5	0.8980
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	4.7	0.8964
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	4.9	0.9075
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	6.6	0.8763
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	7.5	0.8897
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	7.6	0.8658
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	8.1	0.9103

Compare expression of checked genes

Lus10005032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.