Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08910 467 / 9e-167 DNAJ heat shock family protein (.1) AT5G01390 460 / 9e-164 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 442 / 1e-156 DNAJ heat shock family protein (.1.2) AT2G20560 441 / 3e-156 DNAJ heat shock family protein (.1) AT1G10350 355 / 3e-122 DNAJ heat shock family protein (.1) AT5G25530 354 / 7e-122 DNAJ heat shock family protein (.1) AT1G59725 343 / 1e-117 DNAJ heat shock family protein (.1) AT3G47940 337 / 3e-115 DNAJ heat shock family protein (.1) AT2G20550 256 / 2e-84 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 167 / 1e-48 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027803 [exp] 611 / 0 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10017687 [exp] 443 / 8e-157 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 408 / 4e-143 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013981 [exp] 406 / 3e-142 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10030803 [exp] 367 / 4e-127 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10021961 [exp] 365 / 3e-126 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10013280 [exp] 367 / 4e-126 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10041254 [exp] 361 / 8e-125 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10036668 [exp] 346 / 2e-118 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016100 [exp] 439 / 3e-155 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 436 / 2e-154 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 421 / 5e-148 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 417 / 8e-147 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 403 / 7e-141 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 374 / 5e-130 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 372 / 2e-129 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 367 / 2e-127 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 363 / 1e-125 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 338 / 1e-115 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005033 pacid=23148992 polypeptide=Lus10005033 locus=Lus10005033.g ID=Lus10005033.BGIv1.0 annot-version=v1.0 ATGGGAGTGGATTACTACAAGGTCCTCCAGGTCGACCGCGGAGCCAAAGACGACGATTTGAAGAAAGCGTATCGTAAGCTGGCCATGAAGTGGCATCCCG ATAAGAACCCTAACGGCAAGAAAGAAGCTGAAGCCAAATTCAAACAAATCTCCGAAGCCTACGATGTATTGAGCGATCCACAGAAGAGGGCAATCTACGA TCAGTACGGAGAGGAAGGTCTGAAAGGGCAAGTGCCTCCACCGGGAGCTTCAGCTCACAGCGGGTTCGGGCAGGACGCTGGTTCTGGAAATTTCCGGTTC AACCCGCGCAGTGCCGATGATATATTCTCGGAGTTCTTCGGGTTCTCGAGCCCTTTTGGTGGGATGGGTGACATGGGAGGTGGATCACGAGCTGGTCCTT CAGGGTTTCCTAGGGGTATGTTTGGGGAGGATATCTTTTCCTCATTCAGGTCTGCAGCTGGTGAGCCTTCCAGTGTCCCGCGGAAAGGTGCTGCTATTGA GCGCACATTGCCGTGTAGTTTGGAGGAGTTGTACAAAGGTACCACTAAGAAGATGAAAATTTCGAGGGACGCTATTGATGCCAGTGGGAGACCATCTACT CTAGAGGAAATCCTCACAATTGAGATCAAGCCAGGCTGGAAGAAAGGAACCAAAATCACATTCCCAGAGAAAGGAAACGAGCAACGAGGCATCATACCAT CTGACCTGGTCTTCATCATCGACGAGAAGCCCCATGCAGTGTTCAAAAGAGATGGCAACGACCTCGTCCTCACGCAGAAGATCTCTCTCGTGGAAGCTCT GACAGGCTACGCTGGACAGGTGACAACCCTCGATGGGAGAACCCTAACAGTCGCCGTCAGCTCCATCATCAGTCCGACCTACGAAGAGGTTGTTAAAGGC GAAGGCATGCCCATCCCAAAGGAGCCATCAAAGCGAGGCAATCTGAGAATCAAGTTCAACATCAAGTTCCCCAGCAAGCTGACAGCAGAGCAGAAAACCG GACTCAAGCGGTTGATATCATAG
AA sequence Show only first row Show all	>Lus10005033 pacid=23148992 polypeptide=Lus10005033 locus=Lus10005033.g ID=Lus10005033.BGIv1.0 annot-version=v1.0 MGVDYYKVLQVDRGAKDDDLKKAYRKLAMKWHPDKNPNGKKEAEAKFKQISEAYDVLSDPQKRAIYDQYGEEGLKGQVPPPGASAHSGFGQDAGSGNFRF NPRSADDIFSEFFGFSSPFGGMGDMGGGSRAGPSGFPRGMFGEDIFSSFRSAAGEPSSVPRKGAAIERTLPCSLEELYKGTTKKMKISRDAIDASGRPST LEEILTIEIKPGWKKGTKITFPEKGNEQRGIIPSDLVFIIDEKPHAVFKRDGNDLVLTQKISLVEALTGYAGQVTTLDGRTLTVAVSSIISPTYEEVVKG EGMPIPKEPSKRGNLRIKFNIKFPSKLTAEQKTGLKRLIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08910			DNAJ heat shock family protein...		Lus10005033 [exp]	0	1
AT3G08910			DNAJ heat shock family protein...		Lus10027803 [exp]	1.0	0.9314
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	2.0	0.9078
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	4.6	0.8642
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10015891 [exp]	7.4	0.8554
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10041105 [exp]	13.4	0.8690
AT2G32980			unknown protein		Lus10030015 [exp]	13.9	0.8470
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	17.1	0.8761
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10024441 [exp]	17.8	0.7923
AT5G14530			Transducin/WD40 repeat-like su...		Lus10014558 [exp]	18.3	0.8652
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	20.9	0.8852

Compare expression of checked genes

Lus10005033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.