Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35610 846 / 0 XEG113 xyloglucanase 113 (.1) AT1G70630 80 / 2e-15 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 47 / 3e-05 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01220 44 / 0.0002 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027804 [exp] 1023 / 0 AT2G35610 927 / 0.0 xyloglucanase 113 (.1) Lus10036860 [exp] 76 / 1e-14 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10006212 [exp] 74 / 2e-13 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 58 / 1e-08 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 51 / 1e-06 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10018812 [exp] 50 / 3e-06 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032710 [exp] 49 / 8e-06 AT1G19360 629 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 47 / 3e-05 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041975 [exp] 44 / 0.0002 AT1G14590 196 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235800 [exp] 899 / 0 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.008G186800 [exp] 72 / 8e-13 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.009G113300 [exp] 57 / 2e-08 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 56 / 6e-08 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G134400 [exp] 51 / 2e-06 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G046100 [exp] 50 / 3e-06 AT1G70630 497 / 5e-171 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G051600 [exp] 49 / 5e-06 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 43 / 0.0005 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10005034 pacid=23149006 polypeptide=Lus10005034 locus=Lus10005034.g ID=Lus10005034.BGIv1.0 annot-version=v1.0 ATGATCGGCGCCGGCGCCGGCGATGGCGGATTTTTGTTGAGATGGAGGAATGCATACAACGAATTGGCCAACACAAAGCCATTATTCCTTTCGATCTACG CCACAGTCGTCCTCGGAATTTTCTTCTCCTCCTTTTACGTATTTACAGCCATTCATTCAGCTCCTAGCTCCGCCTCCGCCACCGGTTCCACTGCCTGGCT CTCTGCCCCTACGTCAACGTCTGTTCCGTCTCTCCGAAATGTGGTTTCGCAGTATGTCAACCAATCTCGCAACTTTTCTCAAGCAACCGCAGTATCTTCG CCACTTTCGCATCCTCAGCCATCGGATGATTCGAGAACAAAACCTATATGGGAAGTTCCACCCCAAGACTCCAAGATGCCACCTTTGGAGACCTTTAGAC TGACAGAAGAGCTGGTGCGGCAGAGAGCGAAGGATAATGTCATTATAGTGACGTTTGGTAACTATGCATTTATGGATTTCATCCTTACTTGGGTTAAGCA CTTGACGGACTTGGAGATCTCCAATCTTCTTGTTGGTGCTATGGACACCAAGTTGTTGGAAGCCTTGTACTGGCAAGGTGTTCCTGTGTTTGATATGGGC AGTCACATGAGCACTGTGGATGTTGGCTGGGGCTCACCAACTTTTCATAAAATGGGGAGAGAAAAAGTTATTCTCATAGATGCAATCCTTCCTTTTGGCG TTGAACTACTGATGTGTGACACAGATATGGTCTGGTTGAAGAACCCACTTCCGTACCTGGCTGGATATCCAGAGGCAGACGTCTTAACATCAAGTGACCA AGTTGTCCCAACAGTCACTGACGACAGGCTGGAAATCTGGCAACAAGTTGGTGCTGCTTTCAATATAGGGATTTTCCACTGGAGACCACCAGCGTCTGCG ATGAAACTGGCAAAAGAATGGAAAGAGTTGCTTCTGGCTGATGACAAGATATGGGATCAGAATGGATTCAATGATATTGTACGCAAGCAGTTAGGGCCAT CAGTTAATGACGATGATGGCCTTGCATATGCTTTTGATGGAAGTCTGAAGCTTGGAATTTTGCCTGCCAGTATATTTTGCAGTGGACATACGTACTTTGT CCAGGCCATGCATCTGCAGCTCAGGTTAGAACCATATGCAGTGCATACCACATTCCAATATGCTGGCACTGAAGGCAAGCGTCACAGATTACGAGAAGCC ATGGCTTTTTATGATCCCGTGGGCTATTATGATGCTCCAGGAGGTTTCTTGTCATTTAAACCATCCATTCCAAAGAATTTGCTACTGGAAGGAGAGCATA ATCTCGAGTCTCACTTTGCCCTTGTTAATTTCCAAATAAAACAAATAAGGACTGCACTTGCAATAGCCACCTTGTTAAATCGCACCCTGGTGATGCCCCC ATTGTGGTGCAGGTTGGATAGGCTATGGTTTGCTCATCCTGGAATTCTGGAAGGGACCCTGACTAAACAACCTTTTATCTGCCCTTTGGATCATGTGTTC GAGGTCAATGTCATGTTGAAAGAGCTTCCCGAAGAAGAGTTTGGCCCTGGCATCAATATCAGAGAGTACTCTTTCCTTGACAATCCCTCAATGCCTAAAA AATTCACCTCGACATTTGCTGCTTTCAAAGATGTCAAAGTCATTCAGTTCTCCTCAGTGCAAGATAACCGGGAAGACAAATTCAGGAAACGGGCGAAGCG ATACGTGGGCATATGGTGCTGTGTGGACAGTCATATTCCTGGGCATATATATTACGACATGTACTGGGACGAGAAGCCTGGTTGGAAGCCGATCCCACCG CAGTTGCCAGCAGACGATCACCCGAATTGGTAA
AA sequence Show only first row Show all	>Lus10005034 pacid=23149006 polypeptide=Lus10005034 locus=Lus10005034.g ID=Lus10005034.BGIv1.0 annot-version=v1.0 MIGAGAGDGGFLLRWRNAYNELANTKPLFLSIYATVVLGIFFSSFYVFTAIHSAPSSASATGSTAWLSAPTSTSVPSLRNVVSQYVNQSRNFSQATAVSS PLSHPQPSDDSRTKPIWEVPPQDSKMPPLETFRLTEELVRQRAKDNVIIVTFGNYAFMDFILTWVKHLTDLEISNLLVGAMDTKLLEALYWQGVPVFDMG SHMSTVDVGWGSPTFHKMGREKVILIDAILPFGVELLMCDTDMVWLKNPLPYLAGYPEADVLTSSDQVVPTVTDDRLEIWQQVGAAFNIGIFHWRPPASA MKLAKEWKELLLADDKIWDQNGFNDIVRKQLGPSVNDDDGLAYAFDGSLKLGILPASIFCSGHTYFVQAMHLQLRLEPYAVHTTFQYAGTEGKRHRLREA MAFYDPVGYYDAPGGFLSFKPSIPKNLLLEGEHNLESHFALVNFQIKQIRTALAIATLLNRTLVMPPLWCRLDRLWFAHPGILEGTLTKQPFICPLDHVF EVNVMLKELPEEEFGPGINIREYSFLDNPSMPKKFTSTFAAFKDVKVIQFSSVQDNREDKFRKRAKRYVGIWCCVDSHIPGHIYYDMYWDEKPGWKPIPP QLPADDHPNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10005034 [exp]	0	1
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10003013 [exp]	3.2	0.6974
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10012595 [exp]	5.7	0.6787
AT2G42490			Copper amine oxidase family pr...		Lus10019485 [exp]	6.0	0.6868
AT3G57200			unknown protein		Lus10018036 [exp]	6.4	0.7065
AT1G13570			F-box/RNI-like superfamily pro...		Lus10019144 [exp]	14.5	0.6380
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10005795 [exp]	32.4	0.6773
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10011044 [exp]	33.6	0.6691
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10031934 [exp]	33.8	0.6570
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10010795 [exp]	34.6	0.6313
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	35.7	0.6634

Compare expression of checked genes

Lus10005034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.