Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05610 306 / 3e-106 Alfin AL1 alfin-like 1 (.1.2) AT3G11200 283 / 6e-97 Alfin AL2 alfin-like 2 (.1.2) AT5G20510 249 / 1e-83 Alfin AL5 alfin-like 5 (.1) AT2G02470 248 / 3e-83 Alfin AL6 alfin-like 6 (.1.2) AT3G42790 245 / 9e-82 Alfin AL3 alfin-like 3 (.1) AT1G14510 241 / 3e-80 Alfin AL7 alfin-like 7 (.1) AT5G26210 226 / 2e-74 Alfin AL4 alfin-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027805 [exp] 406 / 8e-145 AT5G05610 320 / 6e-111 alfin-like 1 (.1.2) Lus10014843 [exp] 316 / 6e-110 AT5G05610 363 / 2e-128 alfin-like 1 (.1.2) Lus10009889 [exp] 316 / 9e-110 AT5G05610 358 / 2e-126 alfin-like 1 (.1.2) Lus10028280 [exp] 294 / 4e-101 AT5G05610 333 / 7e-117 alfin-like 1 (.1.2) Lus10040207 [exp] 291 / 2e-100 AT5G05610 309 / 2e-107 alfin-like 1 (.1.2) Lus10015637 [exp] 254 / 4e-85 AT5G20510 353 / 4e-124 alfin-like 5 (.1) Lus10026269 [exp] 243 / 5e-81 AT2G02470 380 / 7e-135 alfin-like 6 (.1.2) Lus10026268 [exp] 243 / 5e-81 AT2G02470 382 / 2e-135 alfin-like 6 (.1.2) Lus10042402 [exp] 221 / 3e-72 AT2G02470 357 / 4e-126 alfin-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116900 [exp] 338 / 1e-118 AT5G05610 305 / 1e-105 alfin-like 1 (.1.2) Potri.006G100900 [exp] 333 / 5e-117 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2) Potri.010G188100 [exp] 320 / 1e-111 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.008G069200 [exp] 317 / 1e-110 AT5G05610 336 / 5e-118 alfin-like 1 (.1.2) Potri.018G050200 [exp] 266 / 4e-90 AT5G20510 343 / 4e-120 alfin-like 5 (.1) Potri.006G145300 [exp] 259 / 2e-87 AT5G20510 311 / 1e-107 alfin-like 5 (.1) Potri.006G223500 [exp] 259 / 3e-87 AT5G20510 327 / 5e-114 alfin-like 5 (.1) Potri.003G044700 [exp] 250 / 9e-84 AT2G02470 363 / 3e-128 alfin-like 6 (.1.2) Potri.004G230500 [exp] 248 / 4e-83 AT2G02470 361 / 3e-127 alfin-like 6 (.1.2) Potri.004G104201 [exp] 42 / 0.0002 AT1G79000 860 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF12165 [flax] [poplar] Alfin Alfin
Representative CDS sequence Show only first row Show all	>Lus10005035 pacid=23149025 polypeptide=Lus10005035 locus=Lus10005035.g ID=Lus10005035.BGIv1.0 annot-version=v1.0 ATGGGAATGGCCTCCAGTCCGCGTACCGTGGAGGAGATCTTCAAAGATTACAGTTCCCGCAGAGCCGGTATCGTTCGTGCCTTGACTGACGATTCGGACG AGTTCTACGCACTCTGTGATCCAGATAAGGAGAATTTGTGTCTCTACGGACATCCAAATGACAGCTGGGAGGTAACTCTACCGGCCGAGGAAGTGCCACC GGAACTTCCTGAACCCGTCCTCGGTGTCAATTTTGCTCGAGATGGCATGAACCGGAGGGACTGGCTTTCACTCATTGCTGTTCATAGTGATTCATGGCTG CTCTCGGTGGCTTTCTATCTCGGAGCTCGTCTTAACAGGAACGATAGGAAACGACTCTTCAGCTTGATCAACGAACTGCCCACTGTCTTTGAAGTTGTAA CAGACCGGAAACCTAAAGAAAAGTCTAGTGTAGATAGTGGAAGCAAATCTCGAGGCAGCAATAAGTTGCAGAGACTAAGTGATGGACAAGTGCGAAGCAA CCCGAAACTTGCAGAAGGAAACTTCCAGGAGGGTGAGGGTGAACATACTGATACCCTATGTGGAAGTTGTGGAGGAAACTACAGCGCTGATGAATTCTGG ATTGGTTGTGATGTCTGCGAGAGATGGTTCCATGGGATGTGTGTGAAAATAACTCCTGCCAAAGCTGAGACTATTAAGCAATACAAATGCCCATCATGCT GCCTGAAGAGGAGCAGGCCGTAA
AA sequence Show only first row Show all	>Lus10005035 pacid=23149025 polypeptide=Lus10005035 locus=Lus10005035.g ID=Lus10005035.BGIv1.0 annot-version=v1.0 MGMASSPRTVEEIFKDYSSRRAGIVRALTDDSDEFYALCDPDKENLCLYGHPNDSWEVTLPAEEVPPELPEPVLGVNFARDGMNRRDWLSLIAVHSDSWL LSVAFYLGARLNRNDRKRLFSLINELPTVFEVVTDRKPKEKSSVDSGSKSRGSNKLQRLSDGQVRSNPKLAEGNFQEGEGEHTDTLCGSCGGNYSADEFW IGCDVCERWFHGMCVKITPAKAETIKQYKCPSCCLKRSRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	0	1
AT1G20460			unknown protein		Lus10034569 [exp]	4.0	0.6351
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	5.1	0.7320
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	6.3	0.7330
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10022943 [exp]	12.6	0.7027
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	14.4	0.7101
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10027805 [exp]	20.0	0.6523
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	20.0	0.7141
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	21.0	0.6255
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	24.4	0.6511
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	27.9	0.6820

Compare expression of checked genes

Lus10005035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.