Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11180 466 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 458 / 7e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 447 / 1e-157 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 412 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 243 / 1e-77 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 241 / 5e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 238 / 9e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 238 / 2e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 231 / 5e-73 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 229 / 4e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004808 [exp] 565 / 0 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027807 [exp] 462 / 1e-164 AT5G05600 330 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004387 [exp] 449 / 3e-158 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10037292 [exp] 243 / 3e-77 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10022292 [exp] 237 / 5e-75 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011979 [exp] 236 / 1e-74 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10028068 [exp] 233 / 8e-74 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10026173 [exp] 232 / 7e-73 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10006518 [exp] 229 / 8e-72 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117100 [exp] 537 / 0 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 513 / 0 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 506 / 1e-180 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 489 / 3e-174 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 483 / 1e-171 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G024100 [exp] 250 / 4e-80 AT4G16330 419 / 7e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355100 [exp] 248 / 2e-79 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G382400 [exp] 246 / 1e-78 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 241 / 7e-77 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.010G023600 [exp] 241 / 1e-76 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10005037 pacid=23149000 polypeptide=Lus10005037 locus=Lus10005037.g ID=Lus10005037.BGIv1.0 annot-version=v1.0 ATGAACTGCGTCCAGAAATGGCCCGAACCCGTAACCCGAGTCCAGTCCCTGTCCGAGAGCGGGATCCGAAAAATCCCCGACCGTTACGTCAGCAGGCCCC ACCACCGCCCTTCTCTCACTCTCAACATAAACAAACCTCAAGCCCCACCGCCGCCGCCGCCGGCCGCGTCCAACATCCCGGTGATCGACCTTGCGGAGGC GTTCTGCAGCGACCCGGCGGCCAGGGCGGAGACCATGAGGAAGCTTTCCGCGGCCTGCAAGGACTGGGGGTTCTTCCAGGTGGTCAACCACGGCGTTGAC CTTGAGCTGATGAGGAAGATTAGGGAGATTTGGCGGGATTTCTTTAACCTCCCGCTCGGGACGAAGCAGATTTACTCAAACGACCCCGTTTCGTACGAGG GTTACGGCAGCCGGTTGGGTGTCGAGAAGGGGGCCGTCTTGGACTGGAGTGATTATTTTTTTCTTCATTACCTCCCGGCGAGGATCCGTAACCCGACCAA GTGGCCCGAGTTCCCCGATTCTTGCAGAGAATTGGTGGGTGAATATGGAAAAGAGGTTGCAGGGCTAGGAGGAAAACTAATGAAGATATTCTCGAGCAAC CTTGGCCTCGAAGAGGACGGTCTCCAAGACGCCTTCGGCGGGGAAGACTTCGGCGGATGCTTAAGGATTAACTTCTACCCGAAATGCCCTCAGCCGGACC TAACCTTAGGCCTTTCACCTCACTCCGACCCCGGTGGCATGACCATCCTCTTGCCCGACGAAAACGTCTCTGGTCTCCAGGTCCGTAAATCCGGCAATTG GGTCACCGTTAATCCCGTCGCCAATGCCTTCATCATCAACATCGGAGACCAGATTCAGGTGTTGAGCAATGCGATTTACAAAAGCGTGGAGCATAGGGTG ATAGTGAACTCGGCCAAGGATCGAGTTTCCCTGGCGTTCTTCTACAACCCACGGGGCGACCTTCAGATCGCACCGTCGAAGGAGCTAGTGAAGGCCGATC AACCAGCGCTTTACCCGTCAATGACGTATAATGAGTACAGAATGTTCATCAGGACTAAGGGACCGTGTGGAAAGCAACAAGTTGAATCTTTCAAATCGCC TTATACTAGTAGTAGTACTGATACTAGTACCAGACGAAGTTAG
AA sequence Show only first row Show all	>Lus10005037 pacid=23149000 polypeptide=Lus10005037 locus=Lus10005037.g ID=Lus10005037.BGIv1.0 annot-version=v1.0 MNCVQKWPEPVTRVQSLSESGIRKIPDRYVSRPHHRPSLTLNINKPQAPPPPPPAASNIPVIDLAEAFCSDPAARAETMRKLSAACKDWGFFQVVNHGVD LELMRKIREIWRDFFNLPLGTKQIYSNDPVSYEGYGSRLGVEKGAVLDWSDYFFLHYLPARIRNPTKWPEFPDSCRELVGEYGKEVAGLGGKLMKIFSSN LGLEEDGLQDAFGGEDFGGCLRINFYPKCPQPDLTLGLSPHSDPGGMTILLPDENVSGLQVRKSGNWVTVNPVANAFIINIGDQIQVLSNAIYKSVEHRV IVNSAKDRVSLAFFYNPRGDLQIAPSKELVKADQPALYPSMTYNEYRMFIRTKGPCGKQQVESFKSPYTSSSTDTSTRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10005037 [exp]	0	1
AT3G05950			RmlC-like cupins superfamily p...		Lus10032017 [exp]	7.1	0.9635
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10002450 [exp]	11.3	0.9656
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	18.7	0.9636
AT1G45063			copper ion binding;electron ca...		Lus10006657 [exp]	21.5	0.9578
AT5G39160			RmlC-like cupins superfamily p...		Lus10032016 [exp]	24.2	0.9623
AT1G35210			unknown protein		Lus10036476 [exp]	25.3	0.9615
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	26.2	0.9594
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10015296 [exp]	27.3	0.9595
AT5G25930			Protein kinase family protein ...		Lus10034978 [exp]	30.6	0.9380
AT3G48140			B12D protein (.1)		Lus10036977 [exp]	31.4	0.9592

Compare expression of checked genes

Lus10005037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.