Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51850 794 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT5G19450 644 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT5G12480 644 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT1G74740 635 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT1G18890 615 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT3G57530 613 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 598 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT2G31500 562 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 508 / 2e-178 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 503 / 2e-176 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027808 [exp] 874 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10004807 [exp] 832 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 821 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027361 [exp] 642 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042185 [exp] 642 / 0 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10009947 [exp] 635 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014907 [exp] 628 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 616 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10008631 [exp] 615 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117200 [exp] 808 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G101300 [exp] 801 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.015G066200 [exp] 649 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 648 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.001G257100 [exp] 642 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.009G052700 [exp] 637 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.016G054600 [exp] 635 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G052900 [exp] 634 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.007G127000 [exp] 551 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.009G069200 [exp] 499 / 5e-175 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10005038 pacid=23149007 polypeptide=Lus10005038 locus=Lus10005038.g ID=Lus10005038.BGIv1.0 annot-version=v1.0 ATGAAGCATCTGCCGAGGAACTCGAGCATCGTGAGCTTCAAAGAGGCCTGCGAGGACGACAACGCCGTGCATTTGGTGATGGAGCTCTGCGAAGGTGGGG AGCTGTTTGATAGGATTGTGGCCAGAGGGCATTACACGGAGCGAGCTGCTGCTGCTGTGGTGAGGACGATTGTGGAGGTTGTTCAGTTGTGTCATAAGCA CGGTGTGATTCACAGGGACTTGAAGCCGGAGAATTTCCTGTTTGCTAATAAGAAGGAGAATTCGCCTCTCAAGGCCATTGATTTTGGCTTGTCTATTTTC TTCAAGCCAGGGGAGAAGTTCTCCGAAATTGTTGGAAGTCCATATTACATGGCCCCGGAGGTGCTGAAGCGGAACTATGGGCCTGAGATTGACATATGGA GTGCAGGGGTCATTCTCTACATTTTGTTATGTGGAGTTCCTCCATTTTGGTCTGAGTCTGAGCAAGGAGTGGCGCAGGCTATTATCCGCGGTATCATAGA TTTTAAACGGGATCCTTGGCCAAACATTTCAGATAGCGCCAAGAGTCTGGTCAAAGCAATGTTAGAACCAGACCCAAAAGTCCGGTTGACTGCGAAACAA GTTCTTGAGCATCCATGGCTGGTAAATGCCAAAAAAGCTCCAAACGTTCCTCTTGGAGATGTGGTGAGAGCAAGGCTTAAACAATTTTCCATGATGAACC GGTTCAAAAGAAAAGCCTTACGGGTTATTGCCGACTTCTTATCTGGCGAAGAGATTGAAGACATCAAAGAGATGTTCAAAAAGATGGACTCTGACAATGA TGGTATTATCTCAATTGAGGAACTGAAAGCTGGACTCCGTAAACAATCCAAGCTTGCCGAATCAGAAGTTCAAATGTTGATCGAGGCTGTAGATACCAAT GGGAAAGGCACGCTAGACTACAGCGAGTTCATTGCTGTTTCGCTCCACCTACAAAGAATGGCGAACGACGAGCATCTGCGCAAGGCCTTCTCCTACTTCG ACAAAGACGGGAATGGCTATATCGAACCAGAGGAGCTCCGGGATGCTCTTATGGAAGATGGAGCAGATGATTGTACAGATGTAGCAAATGACATCTTCCA AGAAGTGGATACAGACAAGGATGGGAAAATAAGCTACGAGGAATTCGACGCCATGATGAAGACAGGGACAGACTGGAGGAAGGCTTCCCGGCATTACTCG AGAGGGAGATTCAACAGCCTTAGCATCAAGCTGATGAAGGATGGCTCACTCAACTTGGGGAACGAGTGA
AA sequence Show only first row Show all	>Lus10005038 pacid=23149007 polypeptide=Lus10005038 locus=Lus10005038.g ID=Lus10005038.BGIv1.0 annot-version=v1.0 MKHLPRNSSIVSFKEACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVVRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIF FKPGEKFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWSESEQGVAQAIIRGIIDFKRDPWPNISDSAKSLVKAMLEPDPKVRLTAKQ VLEHPWLVNAKKAPNVPLGDVVRARLKQFSMMNRFKRKALRVIADFLSGEEIEDIKEMFKKMDSDNDGIISIEELKAGLRKQSKLAESEVQMLIEAVDTN GKGTLDYSEFIAVSLHLQRMANDEHLRKAFSYFDKDGNGYIEPEELRDALMEDGADDCTDVANDIFQEVDTDKDGKISYEEFDAMMKTGTDWRKASRHYS RGRFNSLSIKLMKDGSLNLGNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10005038 [exp]	0	1
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10027808 [exp]	1.0	0.8483
AT3G58110			unknown protein		Lus10039903 [exp]	3.9	0.7672
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10004478 [exp]	6.8	0.8002
AT3G07640			unknown protein		Lus10036423 [exp]	7.4	0.7237
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10033577 [exp]	9.8	0.7300
AT3G58110			unknown protein		Lus10002186 [exp]	10.2	0.7416
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	10.2	0.7491
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10041890 [exp]	10.4	0.7448
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	12.6	0.7267
AT5G14230			unknown protein		Lus10022339 [exp]	14.7	0.7273

Compare expression of checked genes

Lus10005038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.