Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58330 41 / 0.0001 ZW2 transcription factor-related (.1) AT5G06950 40 / 0.0002 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06839 40 / 0.0003 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT3G12250 39 / 0.0006 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025265 [exp] 89 / 1e-21 AT1G58330 122 / 3e-33 transcription factor-related (.1) Lus10013746 [exp] 45 / 4e-06 AT3G14880 141 / 5e-41 unknown protein Lus10026166 [exp] 41 / 9e-05 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 41 / 0.0001 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 40 / 0.0002 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10020610 [exp] 40 / 0.0003 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10042453 [exp] 39 / 0.0004 AT3G14880 145 / 3e-42 unknown protein Lus10019543 [exp] 39 / 0.0006 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10026217 [exp] 38 / 0.0008 AT3G14880 83 / 7e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 47 / 1e-06 AT3G14880 159 / 6e-48 unknown protein Potri.003G194600 [exp] 40 / 0.0002 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.004G058200 [exp] 39 / 0.0006 AT4G18650 226 / 1e-74 transcription factor-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005041 pacid=23149011 polypeptide=Lus10005041 locus=Lus10005041.g ID=Lus10005041.BGIv1.0 annot-version=v1.0 ATGCAGCACCACCGCCGTCCTCGGCCGCCGGCCAATACTCGAAGCAGCTCATCCTCCTTCGCCGCCGCCAATGCAGCGGACCTATTCGCCGCCTTCTTCG ACAGCTGGCTGGTCCGTCAGCAACACTACCACGACGAGCTCCAAACCGCCGTCGATTCACGCGCCGCTCTGGACGAGGGCCACATCCGGGACCTGGTAAA CCGGGTCCTGACCCATTACCAGCACTACTTCGAAGAGAAGTCCCGACTCGCCCACTCCGACGTCTTCATCCTCTTCTCCCCGCCGTTTCACCCTCTTCTC CCCGCCGGGGTTCACCTCCTTGGAGCGGAGCTTCTTCTGGATCGCCGGGTTCAAGCCGGGACTAGCCTTCCGGGTCCTGCGCGATTCGGTAGGCAGCCTC TCGCCGGAGCAGGATTGGAGCTTGTGTAA
AA sequence Show only first row Show all	>Lus10005041 pacid=23149011 polypeptide=Lus10005041 locus=Lus10005041.g ID=Lus10005041.BGIv1.0 annot-version=v1.0 MQHHRRPRPPANTRSSSSSFAAANAADLFAAFFDSWLVRQQHYHDELQTAVDSRAALDEGHIRDLVNRVLTHYQHYFEEKSRLAHSDVFILFSPPFHPLL PAGVHLLGAELLLDRRVQAGTSLPGPARFGRQPLAGAGLELV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	0	1
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	1.7	0.9095
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	2.4	0.9070
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	3.2	0.8993
AT1G62730			Terpenoid synthases superfamil...		Lus10032248 [exp]	3.2	0.8718
AT5G25500			unknown protein		Lus10002031 [exp]	3.9	0.9044
AT3G06150			unknown protein		Lus10004424 [exp]	4.5	0.8996
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	6.7	0.8727
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	7.5	0.8777
AT5G08060			unknown protein		Lus10040513 [exp]	8.8	0.8837
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10029222 [exp]	9.4	0.8706

Compare expression of checked genes

Lus10005041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.