Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01360 559 / 0 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40150 385 / 1e-131 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT3G55990 387 / 2e-131 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT1G73140 370 / 8e-126 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40320 363 / 5e-123 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT2G40160 355 / 6e-120 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11030 343 / 1e-114 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT5G01620 329 / 4e-109 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 323 / 2e-107 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT3G62390 256 / 2e-80 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027813 [exp] 834 / 0 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10030396 [exp] 399 / 1e-136 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 398 / 5e-136 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 394 / 3e-134 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10040953 [exp] 362 / 4e-122 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10009839 [exp] 360 / 3e-121 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10028141 [exp] 358 / 9e-121 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10042845 [exp] 352 / 2e-118 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 320 / 5e-106 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119100 [exp] 657 / 0 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.010G187600 [exp] 390 / 2e-132 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 385 / 8e-131 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 378 / 7e-129 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.001G376700 [exp] 372 / 1e-126 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 371 / 1e-125 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G073300 [exp] 367 / 2e-124 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 358 / 6e-121 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187300 [exp] 358 / 3e-120 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G125600 [exp] 332 / 2e-110 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10005042 pacid=23149027 polypeptide=Lus10005042 locus=Lus10005042.g ID=Lus10005042.BGIv1.0 annot-version=v1.0 ATGAGCTTATCAACTTGTTCTTCTTCTTCTTCTTCTTCAGTGATCAAGCTCCCTTACCCCATCGTCTTCATATCACTCTGCACCTTAGCCTTCATCGCCC TTCTCTATGCCGATTCCTCCTGGGCTTTCTTCAAGGCCAAGTCTTGCTCCCGGAAACTCGGCCTTCGAAAATCCAAGCATCGGCATTCGGACCACGAGGA GCTGAAGAACTCTGCGATCGATGACCGGTTCGAGTTCGACGGGGAAGAGTGCAGTGTGAACACAGGGAAGTGGGTTTTCAACAAGACGATCAAGCCTCTG TACACGGACAGGAGCTGCCCGTACCTTGACAGGCAAGTTTCCTGCGTCAAGAACGGCCGGAAGGATTCCGATTACCGGCATTGGGAATGGCAGCCTGAAG ATTGCTCCCTTCCAAGATTCGATGCAGAGGTGGCACTGAAGAAGCTAAGAGGCAAGAGGCTAATGTTCGTGGGAGTCTCATTACAAATAGGGAAATGGCA ATCATTCGTGTGTCTGGTAGAATGGATGATTCCTCAAGCCAAGAATCCCCTGAAACGAGGCGACTTCCACACGGTGTTCACCGCGAAAGAATACAACGCG ACGATCGAGTTCTACTGGGCTCCCTTCCTGGTCGAATCGAACACCGACAGGCCGATCATCGGAGACCCGAAGAAGAGGATCATTAAAGTGGATTCTGTGG CCAAGCACGCCAAAAACTGGGTTGGTGTCGATGTTCTGGTGTTTAACACTTACGTTTGGTGGATGAGCGGTCTCACTCTCAACACCCTTTGGGGATCTTT TGAAAATGGGGCAGATGGGTATGAAGTGTTGGACACGGCCGTTGCTTACAAAGTAGGGTTGAGGACTTGGGCCAATTGGATTGATTCAAATATCAACCCG AACAAGACTCGGGTGTTCTTCACTACTATGTCCCCCACCCACTCAAGGAGTGCGGATTGGGGGAAGCCGAATGGGACGAAATGCTTCAACGAGACGAGGC CGATCATGAAGAGGCGGTTTTGGAGCACCGGCTCTGACAGAAAGCTGATGAGCGTAGTTAACGGAGTGAGGGACCGGATGAAAGTCCCGGTGACATTTCT GAACATAACGCAGCTCTCCGATTACAGAATCGACGGCCACGCTTCGGTGTATACGGAGACTGGAGGGAAGTTGTTGACGGAGGAACAGAGAGCGGATCCT ATACACAACGCCGATTGCATCCATTGGTGCCTCCCTGGTGTTCCTGACACTTGGAATCAAATCTTTCTAGCGTATTTGTAG
AA sequence Show only first row Show all	>Lus10005042 pacid=23149027 polypeptide=Lus10005042 locus=Lus10005042.g ID=Lus10005042.BGIv1.0 annot-version=v1.0 MSLSTCSSSSSSSVIKLPYPIVFISLCTLAFIALLYADSSWAFFKAKSCSRKLGLRKSKHRHSDHEELKNSAIDDRFEFDGEECSVNTGKWVFNKTIKPL YTDRSCPYLDRQVSCVKNGRKDSDYRHWEWQPEDCSLPRFDAEVALKKLRGKRLMFVGVSLQIGKWQSFVCLVEWMIPQAKNPLKRGDFHTVFTAKEYNA TIEFYWAPFLVESNTDRPIIGDPKKRIIKVDSVAKHAKNWVGVDVLVFNTYVWWMSGLTLNTLWGSFENGADGYEVLDTAVAYKVGLRTWANWIDSNINP NKTRVFFTTMSPTHSRSADWGKPNGTKCFNETRPIMKRRFWSTGSDRKLMSVVNGVRDRMKVPVTFLNITQLSDYRIDGHASVYTETGGKLLTEEQRADP IHNADCIHWCLPGVPDTWNQIFLAYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	0	1
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	1.0	0.9409
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	2.4	0.9262
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	2.4	0.9257
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	4.0	0.9180
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	5.9	0.9049
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	7.0	0.8947
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	7.1	0.8789
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	7.7	0.8992
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	9.4	0.8857
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10008646 [exp]	9.5	0.8748

Compare expression of checked genes

Lus10005042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.