Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38280 249 / 2e-77 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) AT5G01350 56 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027814 [exp] 257 / 2e-80 AT2G38280 1280 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10002849 [exp] 252 / 2e-78 AT2G38280 1330 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10003378 [exp] 245 / 3e-77 AT2G38280 661 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10037223 [exp] 217 / 2e-65 AT2G38280 989 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10036700 [exp] 218 / 4e-65 AT2G38280 939 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102000 [exp] 253 / 7e-79 AT2G38280 1381 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.016G119300 [exp] 253 / 1e-78 AT2G38280 1355 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.010G034800 [exp] 216 / 5e-65 AT2G38280 974 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.016G118800 [exp] 71 / 3e-16 AT5G01350 85 / 1e-23 unknown protein Potri.006G101901 [exp] 69 / 3e-15 AT5G01350 95 / 1e-27 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00962 [flax] [poplar] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Lus10005043 pacid=23149022 polypeptide=Lus10005043 locus=Lus10005043.g ID=Lus10005043.BGIv1.0 annot-version=v1.0 ATGGCGGGTGGAGGAAATTTCATCCATAGAGTGGTTTCGTACGTGGTGAATGAGCTTGTCGTGAATAGCTTAGCCAACAGCCCTTCGTTTCAAAGATTTG CAGTGAGAACATCGAAGAGGTTGGAGGAGGTTTCGAGCCTTGCGGAGAAGAAGAAAAGAGAACTTGCTGAACATGTGAAAGATGTAACTGATGTAACAAA GCAAGCAATCAGCAAGGCAGAGAAGTCAAAGGGCATGACAACCATCAAATTCCGCTCACATTCTGGAGAGATTGGCCTGGCTATGTCTCCTCTGAGCAAC AATTCTTTGTTTCTTGACTACCATCGCAACCCTTTTCCGAAGTTTTTCCCCCGGGCTCTCAATGTCTCGCTTTCTACCGACGATCCTCTCCAAATCCACT TGACGAAAGAGCCCTTGGTTGAAGAGTACAGCATAGCTGCTTCCGTGTGGAAATTAAGCTCTTGTGACCTTTGCGAGATCGCACGGAATTCGGTTTATCA GTCCGGTTTCTCTCATGCTTTGAAGTCACATTGGATAGGGACGCAGTACTATAAGAGAGGACCCGACGGTAATGACATTGACAAGACAAATGTACCTCAT ATTCGGGTGGAATTCCGTGACACGGTAACTCTCTTATCCTTACTACCATTTTTGCTTCGTCGGGCTCTAATGTTAACTAGTGTCTCATTTCCTTTTCGCT CTGCGTAG
AA sequence Show only first row Show all	>Lus10005043 pacid=23149022 polypeptide=Lus10005043 locus=Lus10005043.g ID=Lus10005043.BGIv1.0 annot-version=v1.0 MAGGGNFIHRVVSYVVNELVVNSLANSPSFQRFAVRTSKRLEEVSSLAEKKKRELAEHVKDVTDVTKQAISKAEKSKGMTTIKFRSHSGEIGLAMSPLSN NSLFLDYHRNPFPKFFPRALNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGTQYYKRGPDGNDIDKTNVPH IRVEFRDTVTLLSLLPFLLRRALMLTSVSFPFRSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10005043 [exp]	0	1
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	1.0	0.8927
AT5G09225			unknown protein		Lus10020870 [exp]	2.0	0.8436
AT2G25830			YebC-related (.1)		Lus10038722 [exp]	4.2	0.7506
AT5G61310			Cytochrome c oxidase subunit V...		Lus10040012 [exp]	4.7	0.7652
AT1G12400			Nucleotide excision repair, TF...		Lus10007001 [exp]	5.1	0.7333
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	6.9	0.8101
AT1G67620			Lojap-related protein (.1)		Lus10036979 [exp]	8.7	0.7985
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10025907 [exp]	9.2	0.7856
AT1G26750			unknown protein		Lus10016383 [exp]	10.2	0.7946
AT3G62810			complex 1 family protein / LVR...		Lus10021599 [exp]	14.0	0.7572

Compare expression of checked genes

Lus10005043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.