Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51810 131 / 2e-40 AT3, GEA1, ATEM1 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1) AT2G40170 106 / 3e-31 GEA6, ATEM6 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027816 [exp] 186 / 2e-62 AT3G51810 155 / 8e-50 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1) Lus10037844 [exp] 103 / 3e-30 AT2G40170 130 / 4e-41 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1) Lus10030394 [exp] 103 / 4e-30 AT2G40170 128 / 2e-40 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1) Lus10000125 [exp] 74 / 6e-19 AT3G51810 89 / 1e-24 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G187100 [exp] 104 / 2e-30 AT2G40170 132 / 6e-42 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0385 [flax] [poplar] Hydrophilin PF00477 [flax] [poplar] LEA_5 Small hydrophilic plant seed protein
Representative CDS sequence Show only first row Show all	>Lus10005044 pacid=23149026 polypeptide=Lus10005044 locus=Lus10005044.g ID=Lus10005044.BGIv1.0 annot-version=v1.0 ATGGCGTCTGGACAGCAGCAGAGGAAGGAGCTTGATGAGAGGGCACGGCAGGGCGAGACGGTGGTTCCTGGCGGAACTGGCGGCAAGAGCCTCGAAGCTC AGGAGCATCTTGCTGAAGGGAGGAGCAGGGGAGGGAACACTAGAAAGGACCAGCTGGGAACAGAAGGGTACAAGGAGATGGGCCACCGTGGAGGGGAGAC GAGGAAGGAGCAGATGGGCACTGAAGGTTATCAGGAGATGGGTCGCAAAGGTGGTCTGAGCACCATGGACAAGTCCGGTGGGGAGCGTGCCGCCGAGGAA GGGATCGAGATCGACGAGTCCAAGTTCACCACTCGTACTTGA
AA sequence Show only first row Show all	>Lus10005044 pacid=23149026 polypeptide=Lus10005044 locus=Lus10005044.g ID=Lus10005044.BGIv1.0 annot-version=v1.0 MASGQQQRKELDERARQGETVVPGGTGGKSLEAQEHLAEGRSRGGNTRKDQLGTEGYKEMGHRGGETRKEQMGTEGYQEMGRKGGLSTMDKSGGERAAEE GIEIDESKFTTRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10005044 [exp]	0	1
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	7.3	0.7294
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030606 [exp]	11.7	0.7284
AT3G58480			calmodulin-binding family prot...		Lus10029323 [exp]	12.2	0.7136
AT5G35390			Leucine-rich repeat protein ki...		Lus10027597 [exp]	23.2	0.6918
AT1G66930			Protein kinase superfamily pro...		Lus10022367 [exp]	25.6	0.7269
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	28.4	0.7006
					Lus10043115 [exp]	30.9	0.6494
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030086 [exp]	32.2	0.6512
AT5G44620		CYP706A3	"cytochrome P450, family 706, ...		Lus10024575 [exp]	32.4	0.6451
AT4G36210			Protein of unknown function (D...		Lus10010626 [exp]	40.9	0.6585

Compare expression of checked genes

Lus10005044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.