Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01340 518 / 0 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT3G54110 109 / 2e-27 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT1G14140 105 / 4e-26 Mitochondrial substrate carrier family protein (.1) AT5G58970 100 / 2e-24 ATUCP2 uncoupling protein 2 (.1.2) AT2G37890 99 / 2e-23 Mitochondrial substrate carrier family protein (.1) AT1G34065 94 / 7e-22 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G03115 94 / 9e-22 Mitochondrial substrate carrier family protein (.1) AT5G19760 94 / 1e-21 Mitochondrial substrate carrier family protein (.1) AT4G24570 92 / 3e-21 DIC2 dicarboxylate carrier 2 (.1) AT3G53940 92 / 5e-21 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027817 [exp] 605 / 0 AT5G01340 526 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Lus10035538 [exp] 103 / 3e-25 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10027755 [exp] 101 / 2e-24 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10007883 [exp] 101 / 5e-24 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10017187 [exp] 99 / 8e-24 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 99 / 2e-23 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 97 / 5e-23 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10034104 [exp] 97 / 9e-23 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10030361 [exp] 94 / 5e-22 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119500 [exp] 538 / 0 AT5G01340 542 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Potri.016G110100 [exp] 103 / 2e-25 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G119650 [exp] 97 / 2e-25 AT5G01340 88 / 5e-23 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) Potri.006G095500 [exp] 102 / 5e-25 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.001G247800 [exp] 102 / 6e-25 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.007G019000 [exp] 100 / 4e-24 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.010G121500 [exp] 99 / 2e-23 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.003G053900 [exp] 96 / 2e-22 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 96 / 2e-22 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.001G004500 [exp] 94 / 9e-22 AT5G19760 519 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10005045 pacid=23149005 polypeptide=Lus10005045 locus=Lus10005045.g ID=Lus10005045.BGIv1.0 annot-version=v1.0 ATGGCAGAGCCCAACAACCAAACCCCGACCAACCACCAACCAAACAAGGTCACAATCCCGCCGTACATGAAGGCGATGTCGGGCTCGCTCGGTGGGATAA TGGAGGCCTGCTGTCTACAGCCGATAGACGTCATCAAGACTCGGCTGCAGCTCGACCGGAGCGGGGCGTACAGGGGGATCGTCCACTGTGGATCCACGGT TTGCCAGACTGAAGGGGTTCGAGCTCTGTGGAAAGGATTGACCCCTTTCGCCACTCACTTGACTTTGAAATACTCGCTCCGGATGGGGACCAACGCCGTG CTTCAGTCCGCGTTCAAGGATTCGCAGACTGGACACCTCAGCAATGGCTCCAGGCTCATGTCTGGTTTTGGTGCTGGCGTTTTGGAGGCTCTCGTCATCG TTACTCCGTTCGAGGTATGGCTCCTTGTGCCTGATGTGGTGAAGATCAGACTACAACAGCAAAAAGGGTTAAGCTCCGATCTTCTCAAGTACAAAGGACC AGTACATTGTGCCCGTTTGATCGTCCGAGAGGAAGGAATCCTAGGGCTATGGGCAGGCGCAGCACCAACCGTGATGCGAAACGGCACGAACCAGGCAGCC ATGTTCACAGCCAAGAACGCATTCGACATCCTATTGTGGAAGAAGAACGAAGGGGACGGGAAAGTTCTCCTACCGTGGCAGTCCATGATCTCAGGCTTTC TCGCAGGAACAGCCGGTCCGATCTGCACAGGACCTTTCGACGTGGTGAAAACTCGGCTCATGGCTCAGAGTCGAGCAGGTGGTAATGTGAAGTACAACGG AATGGTTCATGCTATCAGGACGATCTATGCAGAAGAAGGACTGCTTGCCTTGTGGAAAGGATTGATACCTCGGCTGATGAGAATCCCGCCCGGGCAGGCT ATAATGTGGGCTGTGGCTGATCAGGTCATGGGTTTGTATGAGAAGAGGTATAGACCCAATGCAGCTTTGTAG
AA sequence Show only first row Show all	>Lus10005045 pacid=23149005 polypeptide=Lus10005045 locus=Lus10005045.g ID=Lus10005045.BGIv1.0 annot-version=v1.0 MAEPNNQTPTNHQPNKVTIPPYMKAMSGSLGGIMEACCLQPIDVIKTRLQLDRSGAYRGIVHCGSTVCQTEGVRALWKGLTPFATHLTLKYSLRMGTNAV LQSAFKDSQTGHLSNGSRLMSGFGAGVLEALVIVTPFEVWLLVPDVVKIRLQQQKGLSSDLLKYKGPVHCARLIVREEGILGLWAGAAPTVMRNGTNQAA MFTAKNAFDILLWKKNEGDGKVLLPWQSMISGFLAGTAGPICTGPFDVVKTRLMAQSRAGGNVKYNGMVHAIRTIYAEEGLLALWKGLIPRLMRIPPGQA IMWAVADQVMGLYEKRYRPNAAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	0	1
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10027817 [exp]	1.0	0.8787
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	1.4	0.8446
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021971 [exp]	2.2	0.8314
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	2.6	0.8228
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	3.0	0.8345
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	4.2	0.8277
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	6.9	0.8211
AT3G01820			P-loop containing nucleoside t...		Lus10032057 [exp]	7.1	0.7621
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	9.4	0.7575
AT5G57370			unknown protein		Lus10006974 [exp]	10.0	0.8317

Compare expression of checked genes

Lus10005045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.