Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51800 572 / 0 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) AT2G44180 103 / 6e-24 MAP2A methionine aminopeptidase 2A (.1) AT3G59990 101 / 1e-23 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT4G37040 42 / 0.0004 MAP1D methionine aminopeptidase 1D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027818 [exp] 682 / 0 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 634 / 0 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10003379 [exp] 629 / 0 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 331 / 1e-104 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10000403 [exp] 84 / 3e-17 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10005292 [exp] 62 / 2e-10 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4) Lus10010592 [exp] 56 / 3e-08 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4) Lus10027121 [exp] 45 / 8e-05 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1) Lus10019308 [exp] 45 / 0.0001 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102200 [exp] 630 / 0 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 621 / 0 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.004G084800 [exp] 97 / 5e-22 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.017G133200 [exp] 93 / 2e-20 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.005G137400 [exp] 42 / 0.0004 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10005046 pacid=23148995 polypeptide=Lus10005046 locus=Lus10005046.g ID=Lus10005046.BGIv1.0 annot-version=v1.0 ATGTCGGACGAAGAGAGGGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTTGTCACCAAATACAAAGGCGCTGCTGAGATCGTCAATAAGGCCTTGC AGTTGGTCGTGAAGGAATGCAAACCGAAGGCGAAGATCGTTGACCTATGTGAGAAAGGGGATTCTTACATCATAGGGCAAACTGGTAACATGTACAAGAA CGCTAAGAAGAAGATCGAAAAAGGAGTGGCATTTCCTACTTGTGTCTCTGTGAACAATACCGTTGGCCATTTCTCTCCGCTTGCCAGTGATGAGAGGGTG TTGGAAGAGGGTGACATTGTTAAGATTGATATGGGTTGTCATATAGATGGATTCATTGCTGTGGTCGCACATACTCATGTTGTTCATGATGGAGCGGTTA CTGGTAGAGCTGCTGACGTTATTGCAGCTGCCAACACTGCTGCTGAAGTTGCTTTGAGGCTTGTGAGGCCTGGGAAAAAGAACCAAGACGTCACAGATGC AATTCAGAAGGTTGCTGCCGCTTATGACTGCAAGATTGTGGAAGGTGTCCTCAGCCACCAGCTGAAGCAGTTTGTGATAGATGGGAACAAAGTTATACTT AGTGTTGCCAATCCGGACACAAGAGTGGATGATATCGAATTTGAGGAGAATGAAGTTTATGCAGTAGATATTGTAACAAGCACCGGTGAAGGCAAGCCTA AGTTGCTAGACGAGAAAGAGACTACCATATACAAGAGAGCTGTGGACAAGAATTATCACTTGAAGTTGAAAGCATCAAGATTCATTTTCAGTGAAATTAG TCAGAAGTTCCCCATCATGCCTTTCACTGCCAGGGCCTTGGAAGAGAAAAGAGCTAGGTTGGGACTGGTGGAATGTGTGAATCATGAACTACTCCAGCCT TATCCCGTTCTGCATGAAAAGCCCGGTGATTATGTAGCTCATATCAAGTTCACCGTCTTGCTGATGCCGAATGGTTCGGACAGGATTACGTCACATCCTC TACAGGAACTGCAATCTTCAAAGACGATAGAAGATCCTGAAATCAAGGCTTGGTTAGCTCTTGGTACCAAGACAAAGAAGAAGGGTGGAGGAAAGAAGAA GAAAGGTAAGAAAGGGGAGAAAGCTGAAGATGCTGCTGAAGCCGAAGCCGAACCAATGGACGAAACATCCAAAGCCTAA
AA sequence Show only first row Show all	>Lus10005046 pacid=23148995 polypeptide=Lus10005046 locus=Lus10005046.g ID=Lus10005046.BGIv1.0 annot-version=v1.0 MSDEEREEKELDLTSPEVVTKYKGAAEIVNKALQLVVKECKPKAKIVDLCEKGDSYIIGQTGNMYKNAKKKIEKGVAFPTCVSVNNTVGHFSPLASDERV LEEGDIVKIDMGCHIDGFIAVVAHTHVVHDGAVTGRAADVIAAANTAAEVALRLVRPGKKNQDVTDAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVIL SVANPDTRVDDIEFEENEVYAVDIVTSTGEGKPKLLDEKETTIYKRAVDKNYHLKLKASRFIFSEISQKFPIMPFTARALEEKRARLGLVECVNHELLQP YPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQSSKTIEDPEIKAWLALGTKTKKKGGGKKKKGKKGEKAEDAAEAEAEPMDETSKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	0	1
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	1.4	0.9761
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	1.4	0.9722
AT1G48830			Ribosomal protein S7e family p...		Lus10034909 [exp]	4.5	0.9644
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10008632 [exp]	5.0	0.9443
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	5.7	0.9709
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	6.0	0.9655
AT1G48830			Ribosomal protein S7e family p...		Lus10023638 [exp]	8.5	0.9579
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	8.5	0.9514
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10002851 [exp]	9.4	0.9545
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	9.8	0.9631

Compare expression of checked genes

Lus10005046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.