Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40850 496 / 5e-177 UPM1 urophorphyrin methylase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027819 [exp] 659 / 0 AT5G40850 497 / 1e-177 urophorphyrin methylase 1 (.1.2) Lus10003913 [exp] 521 / 0 AT5G40850 482 / 2e-171 urophorphyrin methylase 1 (.1.2) Lus10037476 [exp] 476 / 3e-169 AT5G40850 430 / 2e-151 urophorphyrin methylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G226900 [exp] 497 / 3e-177 AT5G40850 500 / 1e-178 urophorphyrin methylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00590 [flax] [poplar] TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Representative CDS sequence Show only first row Show all	>Lus10005047 pacid=23148998 polypeptide=Lus10005047 locus=Lus10005047.g ID=Lus10005047.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCTGCTGTTTACAAGCTCCCCCATCTCTACCCTTCTCCTTCATCTCCATCTCCCTCTTTACAATTCCCCCAAACCCCAATCACCGTCCGTT GTCGGAGCTCCGGTTCCCCTTTCACCGAAAAGCACTCTCTTCAGCAATACCGGCGGGACAATTGGCTTTACCAACAACACCAACTCAAATCCGAACCCGA ATCGGAATCCGGTGATGAAGACTCAGTCAGGCGAAACGACATCGCATTGCAGCTGCCGGAGCTGAAGAAGCTGCTCCAGGTGCTCAGGGAAAAGAGAAAT GAGTTCGATGAATCGCGGAAATGCGGGAATGTGTTCTTGGTCGGCACTGGGCCTGGTGACCCTGACCTGTTGACGATTAAAGCTCTGAGAGTTATACAGA AGGCTGATTTATTGTTGTACGATAGATTGGTGTCGAATGATGTTCTTGATTTGGTTGGTCCCGGTGCTCGATTGCTGTATGTTGGCAAGACTGCTGGCTA CCACAGCCGAACCCAGGAGGAGATACACGAGTTGCTTTTGAGCTTTGCTGAAGCTGGAGCTAATGTTGTCAGGCTCAAAGGAGGGGATCCTCTCGTGTTT GGTAGAGGTGGTGAGGAAATGGATTTTCTTCAGCAGCAAGGAATCCAAGTCAAGGTTATACCGGGCATCACCGCTGCTTCAGGAATTTCAGCAGAATTGG GGATTCCATTAACTCACCGAGGGGTCGCAACTAGTGTCCGATTTCTAACTGGACATTCACGGAAAGGAGGGACCGATCCACTGTACGTTGCAGAGAATGC AGCCGACCCTGATTCAACCTTGGTGGTATACATGGGTTTGGCTACACTGCCATCCCTTGCATCAAAGCTGATCCACCATGGCTTGCCAATGAACACGCCA GCTGTTGCAGTGGAGAGAGGAACGACACCTCATCAGCGCATTGTGTTTGCAGAACTGAAGGATCTTGCTGACGAGATTGCGGTAGCTGGGTTAGTTTCTC CGACGCTAATCATAATAGGGAAGGTTGTTGCACTTTCACCATTCTGGTCGCGTTCTTCCGAGGAATCAGTCGCTCTGGTTGAAGAGCCGTGTAGAGATAC TAGAAGCTGA
AA sequence Show only first row Show all	>Lus10005047 pacid=23148998 polypeptide=Lus10005047 locus=Lus10005047.g ID=Lus10005047.BGIv1.0 annot-version=v1.0 MAAAAVYKLPHLYPSPSSPSPSLQFPQTPITVRCRSSGSPFTEKHSLQQYRRDNWLYQQHQLKSEPESESGDEDSVRRNDIALQLPELKKLLQVLREKRN EFDESRKCGNVFLVGTGPGDPDLLTIKALRVIQKADLLLYDRLVSNDVLDLVGPGARLLYVGKTAGYHSRTQEEIHELLLSFAEAGANVVRLKGGDPLVF GRGGEEMDFLQQQGIQVKVIPGITAASGISAELGIPLTHRGVATSVRFLTGHSRKGGTDPLYVAENAADPDSTLVVYMGLATLPSLASKLIHHGLPMNTP AVAVERGTTPHQRIVFAELKDLADEIAVAGLVSPTLIIIGKVVALSPFWSRSSEESVALVEEPCRDTRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10005047 [exp]	0	1
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10019856 [exp]	2.2	0.9321
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	3.9	0.9433
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	8.2	0.9390
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	9.8	0.9363
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	12.2	0.9346
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10042283 [exp]	13.4	0.9187
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	14.9	0.9320
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	16.0	0.9297
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	18.5	0.9317
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	21.7	0.9278

Compare expression of checked genes

Lus10005047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.