Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54960 991 / 0 PDC2 pyruvate decarboxylase-2 (.1) AT4G33070 987 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01320 975 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01330 938 / 0 PDC3 pyruvate decarboxylase-3 (.1) AT3G48560 59 / 7e-09 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G17380 51 / 2e-06 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027820 [exp] 1145 / 0 AT5G54960 1058 / 0.0 pyruvate decarboxylase-2 (.1) Lus10003384 [exp] 1049 / 0 AT5G54960 1068 / 0.0 pyruvate decarboxylase-2 (.1) Lus10002217 [exp] 1042 / 0 AT5G54960 1061 / 0.0 pyruvate decarboxylase-2 (.1) Lus10015291 [exp] 908 / 0 AT4G33070 978 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10018181 [exp] 632 / 0 AT4G33070 683 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10025654 [exp] 629 / 0 AT5G54960 686 / 0.0 pyruvate decarboxylase-2 (.1) Lus10016751 [exp] 59 / 1e-08 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10029955 [exp] 53 / 6e-07 AT3G48560 981 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10009141 [exp] 49 / 1e-05 AT5G17380 908 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120100 [exp] 1008 / 0 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 986 / 0 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.011G064000 [exp] 922 / 0 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 913 / 0 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.017G151900 [exp] 898 / 0 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.012G098300 [exp] 64 / 2e-10 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.015G097200 [exp] 58 / 1e-08 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10005048 pacid=23149004 polypeptide=Lus10005048 locus=Lus10005048.g ID=Lus10005048.BGIv1.0 annot-version=v1.0 ATGGACACGAAGATCGGATCAATTGACGCCTGCATGCCGAACTCGACGGACATTTGCTCCGCCGCGGTATCAAACGGCGCCGTCTCCACCGTCCAGTCCT CCACCGTCGCTTCCTCCTTCATGTCCCCCGACGCCACCCTCGGCCGCCACATCGCCCGCCGGCTCGTCCAAATCGGTATCACCGATGTCTTCACCGTCCC CGGCGACTTCAATCTCACTCTCCTCGACCACCTCATCGCCGAGCCTGGGCTCACGAACGTCGGATGCTGCAACGAGCTCAACGCCGGGTACGCCGCTGAC GGCTACGCCCGCTCCCGCGGCGTCGGCTGCTGCGTTGTTACCTTCACCGTCGGTGGCCTCAGCGTCCTCAACGCTATCGCCGGTTCTTACAGTGAGAATC TCCCTGTGATCTGCATCGTTGGTGGCCCTAATTCCAACGATTATGGAACGAACAGGATTCTCCATCACACGATTGGCCTCCCTGATTTCAGTCAGGAGCT TAGATGCTTCCAGACAGTTACCTGCTTCCAGGCTGTAGTGAATAACTTAGAAGATGCACATGAGCTAATCGACACTGCAATTTCAACCGCATTGAAAGAG AGCAAGCCTGTTTACATAAGCATCGGCTGTAATTTGCCCGCATTGCCCCATCCTACATTCAGCCGAGAGCCAGTCCCGTTTTCTCTCAATCCAAGGTTGA GCAATCAGCTTGGTCTCGAGGCAGCAGTGGAAGCAGCTGCCGAGTTCCTCAACAAGGCAGTGAAGCCAGTGCTGGTAGGAGGGCCGAAATTGCGAGTAGC CAAAGCTTGCGACGCGTTCGTCGAGTTAGCTGATGCATCTGCTTATGCTCTAGCGGTAATGCCATCAGGGAAAGGGCTAGTTCCGGAGCACCATCCACAT TTTATCGGCACATACTGGGGTGCGGTGAGCACGGCATTCTGTTCCGAGATTGTCGAATCAGCTGATGCTTATCTGTTTGCTGGGCCGATCTTCAACGACT ATAGCTCCGTGGGGTACTCTCTGCTGCTGAAGAAGGAGAAGGCTATCATTGTGCAGCCTGACAGGGTTGTGATTGGTAATGGACCTGCATTTGGTTGCGT GCTGATGAAGGATTTCTTACAAGCTCTTGCTAAGAGGGTCAACCAGAACAACACCGCTTACGAGAACTACCATAGGATTTTCGTCCCAGAGGGTGTTCCT TTGAAAGGTGAACCTCAGGAGCCCTTAAGGGTTAATGTGTTGTTCCAGCATATACAGAACATGTTGTCTAGTAGGACTGCTGTGATTGCTGAGACTGGGG ATTCTTGGTTCAACTGCCAGAAGCTTAAGCTTCCAACCGATTGCGGATATGAATTCCAGATGCAATACGGATCGATCGGTTGGTCAGTTGGTGCCACTCT CGGGTACGCTCAAGCTGTACCGGACAAGCGTGTGATCGCTTGCATTGGTGATGGTAGCTTTCAGGTGACTGCTCAAGATATTTCAACGATGATCAGAAAC GAGCAGAAGACTATCATCTTCCTGATCAACAACGGAGGGTACACGATCGAGGTCGAGATCCACGACGGCCCTTACAACGTGATCAAGAACTGGAACTACA CTGCCTTGGTTGAAGCTATCCATAACGGGGAAGGAAACGTCTGGACTGCTAAGGTTTTCTGCGAAGAGGAGCTCGTCGAAGCGATAGAAACGGCAATGGG AGAGCAGAAGGACAGCTTGTGTTTCATCGAAGTTCTCGTCCACAAGGACGACACGAGCAAAGAGCTTTTGGAATGGGGATCCAGAGTCTCTGCTGCTAAC AGACGCCCGCCAAACCCACAGTCGCCAAACCCACAGTAG
AA sequence Show only first row Show all	>Lus10005048 pacid=23149004 polypeptide=Lus10005048 locus=Lus10005048.g ID=Lus10005048.BGIv1.0 annot-version=v1.0 MDTKIGSIDACMPNSTDICSAAVSNGAVSTVQSSTVASSFMSPDATLGRHIARRLVQIGITDVFTVPGDFNLTLLDHLIAEPGLTNVGCCNELNAGYAAD GYARSRGVGCCVVTFTVGGLSVLNAIAGSYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCFQAVVNNLEDAHELIDTAISTALKE SKPVYISIGCNLPALPHPTFSREPVPFSLNPRLSNQLGLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACDAFVELADASAYALAVMPSGKGLVPEHHPH FIGTYWGAVSTAFCSEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIGNGPAFGCVLMKDFLQALAKRVNQNNTAYENYHRIFVPEGVP LKGEPQEPLRVNVLFQHIQNMLSSRTAVIAETGDSWFNCQKLKLPTDCGYEFQMQYGSIGWSVGATLGYAQAVPDKRVIACIGDGSFQVTAQDISTMIRN EQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTALVEAIHNGEGNVWTAKVFCEEELVEAIETAMGEQKDSLCFIEVLVHKDDTSKELLEWGSRVSAAN RRPPNPQSPNPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10005048 [exp]	0	1
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10029849 [exp]	1.0	0.9892
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	2.0	0.9867
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10010506 [exp]	3.5	0.9797
					Lus10002596 [exp]	3.9	0.9855
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10003384 [exp]	4.0	0.9650
AT4G33070			Thiamine pyrophosphate depende...		Lus10015291 [exp]	5.2	0.9738
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10030534 [exp]	7.7	0.9778
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	8.7	0.9779
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	8.9	0.9746
					Lus10018421 [exp]	9.9	0.9749

Compare expression of checked genes

Lus10005048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.