Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14440 59 / 3e-09 Leucine-rich repeat protein kinase family protein (.1) AT2G26330 57 / 1e-08 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G80080 53 / 2e-07 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT1G47890 53 / 2e-07 AtRLP7 receptor like protein 7 (.1) AT1G45616 52 / 3e-07 AtRLP6 receptor like protein 6 (.1) AT3G28890 52 / 3e-07 AtRLP43 receptor like protein 43 (.1.2) AT3G20820 50 / 9e-07 Leucine-rich repeat (LRR) family protein (.1) AT4G13880 50 / 1e-06 AtRLP48 receptor like protein 48 (.1) AT5G27060 50 / 2e-06 AtRLP53 receptor like protein 53 (.1) AT5G49290 50 / 2e-06 ATRLP56 receptor like protein 56 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027821 [exp] 150 / 2e-44 AT5G49290 57 / 1e-09 receptor like protein 56 (.1) Lus10003387 [exp] 104 / 3e-24 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10042239 [exp] 102 / 2e-23 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10004313 [exp] 101 / 3e-23 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10026415 [exp] 100 / 9e-23 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10006825 [exp] 90 / 2e-19 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10003389 [exp] 90 / 2e-19 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002212 [exp] 89 / 4e-19 AT5G01300 226 / 4e-70 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2) Lus10000228 [exp] 86 / 3e-18 AT3G05370 231 / 3e-66 receptor like protein 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 80 / 4e-16 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.016G120532 [exp] 77 / 2e-15 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G128400 [exp] 63 / 1e-10 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.007G016700 [exp] 60 / 7e-10 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 61 / 8e-10 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G021400 [exp] 58 / 6e-09 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.016G126900 [exp] 56 / 2e-08 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.012G026900 [exp] 54 / 7e-08 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.018G144700 [exp] 53 / 2e-07 AT1G07390 362 / 5e-109 receptor like protein 1 (.1.2.3) Potri.005G086500 [exp] 52 / 3e-07 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10005049 pacid=23149013 polypeptide=Lus10005049 locus=Lus10005049.g ID=Lus10005049.BGIv1.0 annot-version=v1.0 ATGGTTTGTTTATCTTCTTCATTGCCGAATCTCAAAGTGCTGAGCCTGTCAAACTGCCGAATTTCTGGCCCTATTGATTCATCCATCTCAAAGCTCCAGT CTCTCTCGGTACTTCAATTGGATGGCAACAACTTCTCTTTTTCTCGGGTTCCTGATTGTTTCGATGCTTTCAGAAACTTAAACTATCCTGACTATGGGGT TTTCTGGGCTGATAGGAACTCTACCGAAGACACTGGAAAGTCTGACTCAACTGGAGTATCTGGATTTCTCATCAAACAATTTTACAGGTCTAATGCCATC ACTGAGGAGTTCATCCAAGAATCTCGTGCATCTATACTTGTCGTGAAATACCGACTCACTGGGAAAGCTTTCAGAAACTCGTCGATGTTGACCTCAGTCA CAACTCTTTCAACGGAAGCATCCCTCCATTTCTATTCTCCGTACCATCCTTGCAGCGCGCGGAATCAACTTTCCTTTAACCAACTTCAAGGTCGGGCTCC AGAGTTCTCAGATGCTGCTTCTTCGGTTTTGCAGACTTTAAGCTTGGGAAGCAACATTCTCGACCCCGTGGATGCAAGTGGAGACCAGACTAACTTCTCC GTATATCCTCAGCTTCTGACATTATCACTTGCATCCTGCAATCTGAGGATATTTCCTGATCTTGGTAACCAATCAACGCTAGAATCGCTAGACCTTTCAG GTAACAATATCAATGGGGTTGTACCTCCTTGGATTTTACCATCAACACTACATGATCTCAATCTTTCAAACAACAACCTAATCGGTTTTCAGAGCATGTT TAATGAAGAACCCGAGGACGCTAATTGTCTGGACCTGAGTCGCAATAAGCTTAAAGGCAACATACCTGACGCATTCCAAGCCGAAGATCGGTTCATTGAT CGTCTTCATGTTCCTTTTCTTTTATTTGAAAGACCGGCATTTAAGCCTCCACCACCGTCGCCGCCGACGACTACAATGATAATGCGCCGGTAG
AA sequence Show only first row Show all	>Lus10005049 pacid=23149013 polypeptide=Lus10005049 locus=Lus10005049.g ID=Lus10005049.BGIv1.0 annot-version=v1.0 MVCLSSSLPNLKVLSLSNCRISGPIDSSISKLQSLSVLQLDGNNFSFSRVPDCFDAFRNLNYPDYGVFWADRNSTEDTGKSDSTGVSGFLIKQFYRSNAI TEEFIQESRASILVVKYRLTGKAFRNSSMLTSVTTLSTEASLHFYSPYHPCSARNQLSFNQLQGRAPEFSDAASSVLQTLSLGSNILDPVDASGDQTNFS VYPQLLTLSLASCNLRIFPDLGNQSTLESLDLSGNNINGVVPPWILPSTLHDLNLSNNNLIGFQSMFNEEPEDANCLDLSRNKLKGNIPDAFQAEDRFID RLHVPFLLFERPAFKPPPPSPPTTTMIMRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	0	1
					Lus10027606 [exp]	1.0	0.9981
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	2.8	0.9713
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	3.5	0.9713
AT1G70780			unknown protein		Lus10039287 [exp]	4.0	0.9713
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	5.5	0.8998
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	5.9	0.8790
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	6.0	0.8953
AT5G24130			unknown protein		Lus10001061 [exp]	6.9	0.8576
AT4G39830			Cupredoxin superfamily protein...		Lus10000871 [exp]	7.7	0.8070
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	7.7	0.8286

Compare expression of checked genes

Lus10005049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.