Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13920 40 / 0.0002 AtRLP50 receptor like protein 50 (.1) AT1G45616 39 / 0.0006 AtRLP6 receptor like protein 6 (.1) AT4G13820 0 / 1 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002215 [exp] 59 / 5e-11 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10003389 [exp] 58 / 2e-10 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10003387 [exp] 56 / 1e-09 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10042239 [exp] 54 / 3e-09 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10006824 [exp] 51 / 4e-08 AT3G23110 185 / 2e-50 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10006825 [exp] 51 / 6e-08 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004313 [exp] 50 / 1e-07 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10009330 [exp] 49 / 3e-07 AT1G71400 245 / 2e-69 receptor like protein 12 (.1) Lus10024721 [exp] 42 / 4e-05 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120466 [exp] 57 / 1e-10 AT1G47890 73 / 4e-15 receptor like protein 7 (.1) Potri.016G120600 [exp] 49 / 2e-07 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.T125004 [exp] 44 / 2e-05 AT1G45616 384 / 9e-117 receptor like protein 6 (.1) Potri.009G112061 [exp] 42 / 7e-05 AT1G45616 405 / 1e-124 receptor like protein 6 (.1) Potri.012G029000 [exp] 41 / 0.0001 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.011G104600 [exp] 39 / 0.0008 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005050 pacid=23149024 polypeptide=Lus10005050 locus=Lus10005050.g ID=Lus10005050.BGIv1.0 annot-version=v1.0 ATGGCTACTTCTTATGCCATTCCTGTTCATACTAATAGGCAGCCATGTAAGCTTGGTCTTAGCACTATGCCGGGGAGACCAGTAATCGCTCCTCCTCCAA TCGAAGCAGCGCCACCTCCTCGTTTTCAACCAATCGTTCCCCGGGAAGTTCGCTGGGTGGAACATGAGCACCGATTGCTGTACATGGCCTGGTATAACCT TGATCGTGTCATCGGCCTAGACTTGAGTCACCAACTCATCTCCGGAGGACTTGACGATTCCATACCTCTTTTTAGACTTCAGCATCTCGAGGTCCTGGAT TTGTCTTGGAACATCTTCAACATCACTATTCCAACTGCGCTCGCCAACCTCGCCAATTTGAAGCATTTGAACTTATCATTTGCAGTCAGGTCTCTGCTGA TATCTCTCAGTTGA
AA sequence Show only first row Show all	>Lus10005050 pacid=23149024 polypeptide=Lus10005050 locus=Lus10005050.g ID=Lus10005050.BGIv1.0 annot-version=v1.0 MATSYAIPVHTNRQPCKLGLSTMPGRPVIAPPPIEAAPPPRFQPIVPREVRWVEHEHRLLYMAWYNLDRVIGLDLSHQLISGGLDDSIPLFRLQHLEVLD LSWNIFNITIPTALANLANLKHLNLSFAVRSLLISLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10005050 [exp]	0	1
AT1G57790			F-box family protein (.1)		Lus10019204 [exp]	2.0	0.8179
					Lus10022112 [exp]	3.6	0.8090
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	4.0	0.8484
AT3G60730			Plant invertase/pectin methyle...		Lus10009287 [exp]	4.9	0.8150
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	7.3	0.8178
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	8.5	0.8178
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	9.5	0.8178
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	10.4	0.8178
					Lus10017294 [exp]	11.2	0.8178
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	12.0	0.8178

Compare expression of checked genes

Lus10005050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.