Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51780 206 / 4e-64 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G52060 156 / 5e-44 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G07220 146 / 1e-40 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 144 / 6e-40 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT5G14360 92 / 4e-22 Ubiquitin-like superfamily protein (.1) AT5G40630 92 / 6e-22 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027822 [exp] 501 / 4e-179 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10003393 [exp] 233 / 9e-75 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1) Lus10002209 [exp] 171 / 1e-49 AT3G51780 149 / 6e-43 BCL-2-associated athanogene 4 (.1) Lus10027420 [exp] 162 / 3e-46 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10023279 [exp] 150 / 7e-43 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10038882 [exp] 145 / 3e-40 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 142 / 5e-39 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10005772 [exp] 131 / 7e-35 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10006328 [exp] 116 / 8e-30 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121200 [exp] 242 / 3e-78 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.001G279500 [exp] 222 / 3e-70 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.009G074300 [exp] 210 / 2e-65 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.012G133400 [exp] 157 / 3e-44 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.015G135500 [exp] 153 / 1e-42 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.001G358200 [exp] 141 / 4e-39 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.001G110300 [exp] 131 / 2e-34 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 125 / 9e-33 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.001G339100 [exp] 94 / 1e-22 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0072 [flax] [poplar] PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10005051 pacid=23149020 polypeptide=Lus10005051 locus=Lus10005051.g ID=Lus10005051.BGIv1.0 annot-version=v1.0 ATGAACAACTTAACTTCTCAGAGCGGGGAGGCGGAGCTTGAAGTCAGGCCTGGAGGCATGCTCGTACAGAGAAGAGACGGCGATGAGAATGAGCTCAGTC GTGGCAGCGATGGTGGCGATACTTTGATAAAGATTAACGTCGCTCTTGGTCCTGCTCAGCACGAGGTCCATGTCCCTGCTCAGTCTACTTTCGGTGAGTT GAAAAAGGTCATTGAGCAGAAAACAGGTGTGGAATCTGAGAGGCAGAAGATCTTGTTCCGAGGAAAGGAGAAAGAAGATGGAGAGTACTTACACGAGGCT GGTGTGAAGGATAAGGGGAAGATTTTGGTCTTAGAACAGCCGGTTGTTGTCGAGACGAAACTTGAGGAGATGCCGAAGCCAGATGTGAAGGAAAGAGAGG AGACATCAACTGCTGAAGAGATGGAAGAAGGTGAGCAGCCATTAAATTTCGAGGTGCAGGAAACAGAAGAGATCTTAAAGGCTATGCGAGCTATCGATGA AGTTAGAGCCGAGGTTGATAAGCTTGCTGAAAGGGTGTCTGCACTTGAAGTTACTGTCAATGGTGGAACAAAGATTGCGGAACAGGAGTTTGTTGTTGCA GCAGAGTTGCTAATGAGGCAGTTGCTGAAACTGGACATGATCGAGGCTGGAGGAGAAGCTCGGATCCAGCGAAAGGCTGAGGTGCGCAGAATCCAGAACT TCCACGAGTTGCTGGACAGTTTAAAGGCGACAAATGCAAAGCCAGTTCACACAAACACTTCCCCCAATGTTGCTAAGCCAGTTAACACAACAAACACCTC CTCCAATGTCGCGACTGTGACGACGGATTGGGAAACCTTCGATTCGGGAGTTGGAAGCTTGACTCCTCCACCTCCGGCCACTTCTTCAACGGTAGTAACC GAGGATTGGGAAAGGAATAATTGGATGAAAATCGAACAGAGGGTGCCCCATGTGGGCAAAGAGATCAACAACTCTATTGCCTTCTCTGAAAGTCCGTATA ACTCGAACATTCCAATCTCGTTAAAGGAGATGCTAATATTCGCTAAATGTCGAGCACCGCTTATAGAATCCTTTGTTAGCATAANNNNNNNNCCAAAACA ACAACACCCCCCCCGCCGAATCCAATTGCAAGTTAACTTTCTTGTAACCACTTTCCCATGCAAGGCGGAGACCATGAATTGTTGCGTGGAGCTCAGCTCA AGTGACAGTGCAGACACCCAGGTTTAA
AA sequence Show only first row Show all	>Lus10005051 pacid=23149020 polypeptide=Lus10005051 locus=Lus10005051.g ID=Lus10005051.BGIv1.0 annot-version=v1.0 MNNLTSQSGEAELEVRPGGMLVQRRDGDENELSRGSDGGDTLIKINVALGPAQHEVHVPAQSTFGELKKVIEQKTGVESERQKILFRGKEKEDGEYLHEA GVKDKGKILVLEQPVVVETKLEEMPKPDVKEREETSTAEEMEEGEQPLNFEVQETEEILKAMRAIDEVRAEVDKLAERVSALEVTVNGGTKIAEQEFVVA AELLMRQLLKLDMIEAGGEARIQRKAEVRRIQNFHELLDSLKATNAKPVHTNTSPNVAKPVNTTNTSSNVATVTTDWETFDSGVGSLTPPPPATSSTVVT EDWERNNWMKIEQRVPHVGKEINNSIAFSESPYNSNIPISLKEMLIFAKCRAPLIESFVSIXXXPKQQHPPRRIQLQVNFLVTTFPCKAETMNCCVELSS SDSADTQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10005051 [exp]	0	1
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10027822 [exp]	1.0	0.9858
AT1G25370			Protein of unknown function (D...		Lus10035144 [exp]	5.0	0.9198
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10020516 [exp]	5.5	0.9001
AT1G48780			unknown protein		Lus10009633 [exp]	15.4	0.9107
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10043209 [exp]	15.6	0.9256
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	17.8	0.9248
AT3G53010			Domain of unknown function (DU...		Lus10001129 [exp]	18.0	0.8952
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	20.5	0.9164
AT4G18593			dual specificity protein phosp...		Lus10022402 [exp]	24.0	0.8788
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	25.5	0.9200

Compare expression of checked genes

Lus10005051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.