Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 82 / 1e-17 S-locus lectin protein kinase family protein (.1) AT1G11340 77 / 6e-16 S-locus lectin protein kinase family protein (.1) AT1G11300 77 / 9e-16 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11410 76 / 1e-15 S-locus lectin protein kinase family protein (.1) AT4G21390 75 / 3e-15 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 73 / 1e-14 S-locus lectin protein kinase family protein (.1) AT1G11350 73 / 1e-14 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G65790 72 / 3e-14 ARK1 receptor kinase 1 (.1) AT4G21380 72 / 4e-14 ARK3 receptor kinase 3 (.1) AT1G65800 71 / 7e-14 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013910 [exp] 138 / 5e-37 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030765 [exp] 97 / 1e-24 AT1G11340 88 / 1e-20 S-locus lectin protein kinase family protein (.1) Lus10005136 [exp] 101 / 4e-24 AT1G11340 471 / 2e-155 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 101 / 5e-24 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 100 / 8e-24 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 100 / 1e-23 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 100 / 1e-23 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 99 / 1e-23 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 98 / 4e-23 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036532 [exp] 100 / 8e-25 AT1G11340 247 / 6e-75 S-locus lectin protein kinase family protein (.1) Potri.011G035913 [exp] 95 / 1e-24 AT4G27290 81 / 6e-19 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 102 / 2e-24 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 100 / 4e-24 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 100 / 1e-23 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 96 / 2e-22 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 96 / 2e-22 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 94 / 1e-21 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412400 [exp] 93 / 2e-21 AT4G27290 871 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126101 [exp] 92 / 7e-21 AT4G27290 817 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005052 pacid=23148999 polypeptide=Lus10005052 locus=Lus10005052.g ID=Lus10005052.BGIv1.0 annot-version=v1.0 ATGGATAACTCCGAACTGCCCCATGATGACATACTGGAGAAGATTGTACGCCATCACTTACCAGCATTCTCCGATCGCATCCGATTCTCCCTTGTCTGCA AATCATGGAATTCCCTCGCATTTGGTCGCCAGCGGCAACGACTGCCAGGACTCCTATCTCGGCTACCGGGCAACGCCGCCGGCGCATACCAGTTCTTGCC CATCTCCATGATGGGCATTGGCCGCCACTATGACGAGGACGATACAGGCCTATCGAGTCCTCCCACGTGTCACGTTCCCGGTCGATCATTCTCCTCGTTA CCTGCCCCGAATGTCATCGGTGAGCATATGAAGTCGGAGAAAGGTGTTAATATGAGGAATAGGAAGTCCAAGGTTCTTAGTTATTGGACAGATCGGGTTG CTGAAAGTAAGATTTGGTTTGCTTATGGAAGGGTGTTTTGGAGAGCTAGGAAACCGACCATAGAGATTGTAAGCCTTATTCTGATTTCTCTGCTTCTCCT CTTACATGGAGCAAGAAGTTCCACCTCACTTGACACAGTTACTGCAGACCATCCCATCACCGATGGCAACCTGGTGATCTCCAAAACTGGTAATTTCGCG TTGGGATTCTTCAGTCCTGGAAGTTCCAGCTATAGATATCTTGGCATTTGGTACAATGAGATACCTGAGCGAACCGTGGTGTGGGTTGCTAATAGAGACA CTCCCATCACTGGATCTTCTGGGGTTCTTTCGATTAGTTGA
AA sequence Show only first row Show all	>Lus10005052 pacid=23148999 polypeptide=Lus10005052 locus=Lus10005052.g ID=Lus10005052.BGIv1.0 annot-version=v1.0 MDNSELPHDDILEKIVRHHLPAFSDRIRFSLVCKSWNSLAFGRQRQRLPGLLSRLPGNAAGAYQFLPISMMGIGRHYDEDDTGLSSPPTCHVPGRSFSSL PAPNVIGEHMKSEKGVNMRNRKSKVLSYWTDRVAESKIWFAYGRVFWRARKPTIEIVSLILISLLLLLHGARSSTSLDTVTADHPITDGNLVISKTGNFA LGFFSPGSSSYRYLGIWYNEIPERTVVWVANRDTPITGSSGVLSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10005052 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10039039 [exp]	13.1	0.6647
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	41.4	0.5938
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10008002 [exp]	45.3	0.5882
AT4G01810			Sec23/Sec24 protein transport ...		Lus10010078 [exp]	46.7	0.5975
AT1G69550			disease resistance protein (TI...		Lus10020238 [exp]	48.9	0.5991
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	56.5	0.5919
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	63.4	0.5781
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	64.7	0.5873
AT1G71360			Galactose-binding protein (.1)		Lus10003532 [exp]	83.8	0.5489
					Lus10022127 [exp]	148.0	0.5100

Compare expression of checked genes

Lus10005052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.