Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11410 286 / 4e-86 S-locus lectin protein kinase family protein (.1) AT1G11340 285 / 3e-85 S-locus lectin protein kinase family protein (.1) AT4G21380 276 / 5e-82 ARK3 receptor kinase 3 (.1) AT1G65790 246 / 3e-71 ARK1 receptor kinase 1 (.1) AT1G65800 241 / 2e-69 ARK2 receptor kinase 2 (.1) AT1G61610 235 / 3e-67 S-locus lectin protein kinase family protein (.1) AT1G11330 228 / 9e-65 S-locus lectin protein kinase family protein (.1.2) AT1G61480 211 / 9e-59 S-locus lectin protein kinase family protein (.1) AT1G61380 211 / 1e-58 SD1-29 S-domain-1 29 (.1) AT1G11280 211 / 1e-58 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013910 [exp] 960 / 0 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 663 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005136 [exp] 598 / 0 AT1G11340 471 / 2e-155 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 595 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 480 / 2e-152 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10025512 [exp] 433 / 4e-143 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 433 / 9e-142 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 421 / 3e-137 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 421 / 4e-137 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036400 [exp] 438 / 4e-144 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 431 / 2e-141 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 424 / 1e-138 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 413 / 2e-134 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 389 / 4e-125 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 362 / 6e-115 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 315 / 2e-96 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 303 / 3e-92 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 300 / 2e-91 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 298 / 2e-90 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10005053 pacid=23148991 polypeptide=Lus10005053 locus=Lus10005053.g ID=Lus10005053.BGIv1.0 annot-version=v1.0 ATGAGAGTTGGTTTGAATCGAAGAACAGGTGTAAGTCGGTTCTTGACATCTTGGAGATCAGAGGATGACCCTGGCACTGGCCATTTCACATATAAGCTAA ACCCAAGTGGCTCGTCGCGGTTCTTTATGTACAAAGATATGGATCCTATTTGGCGGAGCGTTCCTTGGCCATGGGAAACTCACCTTGGTTATGTGAATGA CAGTTTTGAAATCACTGAAGATGGAATGTACTTTACAAATAGATTTGTGAATTCTTCAAGTCACGGGAGGGTGGTGGTTCTTCCTTCGGGTTTGTTGAAC CTAGTGATATGGGATGGAGATGCTGGTCATTCCAAGGTAATTTTCACTTCACCGAAGCACGAGTGTGATTTCTATGGAAGTTGTGGTCCTTTCATCAAGT GTTATTCTAGCCTTCTGTTCCCTTTTGAATGCGATTATTTACCTGGCTATGAATCAAGATATCCTCGAAAGTGGGATTCGAGAGATAGGTCAGCTGGGTG TGTAAGAAAACGATCAGAATCGTCTTTTATCTGTGGGGGTGGAGAAGGGTTTGTGAGAATGGAAAAAGTGAAGATACCCGATACCTCAACAGCGGTATTG ATGGTTGAAGTGGGCATGAGTAAATCGAAATGTGAAGATGTGTGCAAGAACAACTGTTCGTGCTCTGCATATGCTACCATCGATAACAATGGGAAAGGGA CTTGTTGTTGGACATGGTACGGAGATCTCATAGATACAGTGCACTTGGCGGTCAATGCTTACGATCTATATGTTCGTGTTGATGCTATTGAATTAGCTGA TTATCTGAAGGAATCAAATGACTTTCCAGAGTCGAGGTTGAATTTGAGTATTGTAATACCATCTTTTGTCTCAGTGTGGCTTGTTATTATCTTGTTTTCC TATCTATGGCTGAGGAAGTGGAAGAACAGGAGGGTGAAGAACAGACGTATCCGGAATATTTTTCATTCAACTGATGGTTCAAATTACTTTGAAGATTCAT TACCATCAAAGCGAAACACCATCTATCCCGAAATACGATTTTTCAGCCTAGGCACCATACATGAAGCCACTGAAGCCTTTTCTCCGGTAAACAAACTTGG ACAAGGCGGGTTTGGTTCAGTGTACAAGGTTAAAGTCTGTCTCTTTTTTGCAACATCTGGAAGCATCCTTAACCATGTCAATGTAACTCTTGCTTCGGGA GGTTTTCAGGGTAAACTGTTCAATGGGCAAGAGATTGCTGTGAAACGAGTGTCAACAAATTCGAGGGAGGGGTTAGAACAGTTTAAGAATGAAGTACTGT TGATTGCAAAACTACAACACAGGAATCTTGTGAAGCTTTACGGCTGCTGCATCGAGGATGATGAACAAATGCTGGTTTACGAATACTTGCCATGCAATAG TTTGGATTCGCTTCTTTTCGGCAAACCCCACCTCGGCTACATGTCACCTGAGTACGTCATCTTTGGAAGGTATTCAGCAAAATCCGACGTCTTCAGCTTC GGTGTAATATTGCTGGAAACGGTCACTAGGAAGAAGATCAATGGATTCTTCCAGCAAGACCCTTCGTTGAGCTTGATCGGTCATGTGTGGGAGCTATGGA GGGCAGGCAGAATCGTGGAGATAATGGATGATTCATCACCGGTGTCGGTAAAAGACTCGAACGAAGCTCTGAGATGCATCCAGATTGGCCTGCTGTGCAC TGAGGAAAATGCACCAGACCGTCCTGATATGCTGGCAGTTGTTCTTATGTTGAACAGTGAAACGACTCCAATTCCGTCCCCCCAAAGCCCTGCATTCGTC TGGATGAAGTCCAAGCTGCCATTTCCACAAGAGCAGCCATGCTCCATAAACGAGATGTCCTTCTCGATGACTTCCAGTCGCTAA
AA sequence Show only first row Show all	>Lus10005053 pacid=23148991 polypeptide=Lus10005053 locus=Lus10005053.g ID=Lus10005053.BGIv1.0 annot-version=v1.0 MRVGLNRRTGVSRFLTSWRSEDDPGTGHFTYKLNPSGSSRFFMYKDMDPIWRSVPWPWETHLGYVNDSFEITEDGMYFTNRFVNSSSHGRVVVLPSGLLN LVIWDGDAGHSKVIFTSPKHECDFYGSCGPFIKCYSSLLFPFECDYLPGYESRYPRKWDSRDRSAGCVRKRSESSFICGGGEGFVRMEKVKIPDTSTAVL MVEVGMSKSKCEDVCKNNCSCSAYATIDNNGKGTCCWTWYGDLIDTVHLAVNAYDLYVRVDAIELADYLKESNDFPESRLNLSIVIPSFVSVWLVIILFS YLWLRKWKNRRVKNRRIRNIFHSTDGSNYFEDSLPSKRNTIYPEIRFFSLGTIHEATEAFSPVNKLGQGGFGSVYKVKVCLFFATSGSILNHVNVTLASG GFQGKLFNGQEIAVKRVSTNSREGLEQFKNEVLLIAKLQHRNLVKLYGCCIEDDEQMLVYEYLPCNSLDSLLFGKPHLGYMSPEYVIFGRYSAKSDVFSF GVILLETVTRKKINGFFQQDPSLSLIGHVWELWRAGRIVEIMDDSSPVSVKDSNEALRCIQIGLLCTEENAPDRPDMLAVVLMLNSETTPIPSPQSPAFV WMKSKLPFPQEQPCSINEMSFSMTSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11410			S-locus lectin protein kinase ...		Lus10005053 [exp]	0	1
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	2.4	0.8274
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	7.7	0.7948
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10002649 [exp]	13.2	0.8065
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10032890 [exp]	15.3	0.7840
AT4G36500			unknown protein		Lus10014291 [exp]	15.8	0.8121
AT3G26670			Protein of unknown function (D...		Lus10012589 [exp]	15.9	0.7648
					Lus10008659 [exp]	16.2	0.8058
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	27.5	0.7608
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	29.7	0.7741
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	31.7	0.7625

Compare expression of checked genes

Lus10005053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.