Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38520 543 / 0 Protein phosphatase 2C family protein (.1.2) AT3G51370 542 / 0 Protein phosphatase 2C family protein (.1.2) AT5G66080 536 / 0 Protein phosphatase 2C family protein (.1) AT3G12620 489 / 2e-173 Protein phosphatase 2C family protein (.1.2) AT3G55050 466 / 1e-164 Protein phosphatase 2C family protein (.1.2) AT5G02760 416 / 5e-145 Protein phosphatase 2C family protein (.1) AT3G17090 407 / 3e-141 Protein phosphatase 2C family protein (.1.2) AT4G33920 377 / 1e-129 Protein phosphatase 2C family protein (.1) AT5G06750 371 / 5e-127 Protein phosphatase 2C family protein (.1.2.3) AT3G16560 156 / 9e-43 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027825 [exp] 771 / 0 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 640 / 0 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 640 / 0 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 565 / 0 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 488 / 3e-173 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 486 / 2e-172 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 474 / 2e-167 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10037779 [exp] 442 / 7e-155 AT3G17090 562 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10028408 [exp] 434 / 4e-152 AT3G51370 457 / 5e-163 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177100 [exp] 617 / 0 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 612 / 0 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 593 / 0 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 582 / 0 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 481 / 4e-170 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 479 / 2e-169 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 434 / 5e-152 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 434 / 7e-152 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 431 / 1e-150 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G297200 [exp] 385 / 2e-132 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10005054 pacid=23149019 polypeptide=Lus10005054 locus=Lus10005054.g ID=Lus10005054.BGIv1.0 annot-version=v1.0 ATGTTACCAGCATTGATGAACCTTCTGAGAGGCTGCTGCTTTCGGCTGAGGACCGGTTCGAACTCAGAAGCCCACCACCACGGTCGCCAAGACGGGTTGT TGTGGTACAAAGACCATGGTCACCACGTGAATGGTGAGTTCTCCATGGCAGTAGTGCAGGCCAACAACTTGCTCGAGGACCAAAGCCAGCTCGAGTCGGG GAGTTTGAGCTTGCAGGATTCTGGTCCGTTCGGTACTTTCGTTGGCGTCTATGATGGGCATGGTGGCCCCGAGACTTCGCGCTATGTCAATGATCACCTC TTCCCGCATCTCAAACGGTTTACTTCAGAGCAACAGACTATGTCAGCAGAAGTAATAAGGAAAGCATTCCAAGCAACAGAAGAAGGGTTCCTTTCTTTGG TTACAAGGCAATGGACAATGAAGCCACAGATTGCAGCGGTTGGTTCTTGCTGCCTGGCCGGGATCATCTGCAACGAGACCCTTTACATCGCCAACTTGGG CGATTCGAGGGCCGTTCTCGGTCGGTCTGTGAAGGCAACAGGACAGGTTTTGTTCATTCAACTCTCGGCCGAGCACAATGCTTCCTATGAGTCCGTGAGG CAGGAGCTCTTCTCGTCGCACCCCGAGGACTCTCAGATCGTCGTGTTGAGGCATAACGTGTGGCGCGTGAAGGGCATTATACAGATCTCCAGATCCATAG GTGATGTATATCTGAAGAAGGCAGAGTTCAACAGGGAGCCTCTATATGCAAAGTTCAGGGTTCGAGAGCCGTTCAAGAAGCCTATATTAAGCGCTGACCC TTCGATTACAGTACATAAGCTGCAACCGGTTGATCAGTTCATCATTTTCGCATCAGACGGGCTGTGGGAGCACTTGAGCAATCAAGAGGCAGTCGACATT GTACATAATCATCCGCGAAATGGGAGTGCGAAGAGGCTAGTGAAAGCTGCGCTACAAGAAGCAGCAAAGAAGAGGGAGATGAGGTACTCGGACTTGAAGA AGATAGACCGTGGAGTCCGACGCCATTTCCACGATGACATCACCGTGGTTGTGGTGTTCCTCGACACGAACCTTGCGAACCGGGCCACCACCTATGGTGG TGGTCCTGGCTTGGGAAACAAGGTAGTTAATGTATCAGTGAGGGGTGGTGAAATGAGTCTCCCTTCAAACACGTTGGCACCGGGCATCACTTGA
AA sequence Show only first row Show all	>Lus10005054 pacid=23149019 polypeptide=Lus10005054 locus=Lus10005054.g ID=Lus10005054.BGIv1.0 annot-version=v1.0 MLPALMNLLRGCCFRLRTGSNSEAHHHGRQDGLLWYKDHGHHVNGEFSMAVVQANNLLEDQSQLESGSLSLQDSGPFGTFVGVYDGHGGPETSRYVNDHL FPHLKRFTSEQQTMSAEVIRKAFQATEEGFLSLVTRQWTMKPQIAAVGSCCLAGIICNETLYIANLGDSRAVLGRSVKATGQVLFIQLSAEHNASYESVR QELFSSHPEDSQIVVLRHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYAKFRVREPFKKPILSADPSITVHKLQPVDQFIIFASDGLWEHLSNQEAVDI VHNHPRNGSAKRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDTNLANRATTYGGGPGLGNKVVNVSVRGGEMSLPSNTLAPGIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38520			Protein phosphatase 2C family ...		Lus10005054 [exp]	0	1
AT4G38520			Protein phosphatase 2C family ...		Lus10027825 [exp]	1.0	0.9274
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10022239 [exp]	7.5	0.8882
AT1G75810			unknown protein		Lus10034536 [exp]	8.2	0.9089
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	12.1	0.8895
AT2G32190			unknown protein		Lus10039015 [exp]	14.4	0.9082
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	19.0	0.9061
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10011841 [exp]	24.2	0.8934
AT1G16770			unknown protein		Lus10037300 [exp]	25.0	0.8885
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	25.9	0.8859
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	28.3	0.8985

Compare expression of checked genes

Lus10005054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.