Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20920 237 / 2e-77 Protein of unknown function (DUF3353) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005056 [exp] 468 / 2e-168 AT2G20920 314 / 1e-107 Protein of unknown function (DUF3353) (.1) Lus10027826 [exp] 448 / 1e-160 AT2G20920 309 / 7e-106 Protein of unknown function (DUF3353) (.1) Lus10024004 [exp] 291 / 1e-98 AT2G20920 332 / 8e-115 Protein of unknown function (DUF3353) (.1) Lus10025079 [exp] 271 / 9e-91 AT2G20920 333 / 5e-115 Protein of unknown function (DUF3353) (.1) Lus10009608 [exp] 45 / 2e-05 AT5G23040 333 / 3e-117 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177300 [exp] 285 / 3e-96 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1) Potri.009G137600 [exp] 278 / 2e-93 AT2G20920 301 / 2e-102 Protein of unknown function (DUF3353) (.1) Potri.019G018300 [exp] 44 / 8e-05 AT1G08640 342 / 2e-118 Chloroplast J-like domain 1 (.1) Potri.012G057700 [exp] 41 / 0.0004 AT5G23040 316 / 3e-109 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Potri.013G046200 [exp] 40 / 0.001 AT1G08640 358 / 5e-125 Chloroplast J-like domain 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10005055 pacid=23149012 polypeptide=Lus10005055 locus=Lus10005055.g ID=Lus10005055.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCCTCTCCCTCCGGCCAAATCACCACCGCCTCTCTCCCTCCGGCGCCTCTCCTTCCTTCCTCCGGCCTCCCTACCTCTCCATGCCAGAGT TCGCATCCTACCGTTGCAGGACATCAATTTTTGCTCCACCGCTGCGGCGGATGCTGGCCAGAGCCAGAAGCTCCAGGGCCGACGATTCGGCGCCGTTCGA GATGTCTCTGGAGAACGCTCGCGCTCTACTCGGAGTCTCCGCCGGCGCTTCCTTCGACGATGTGCTTCGCGCCAAGAACTCGATCCTCTCCACCTGCAAA GATGAGCCGGACGCAATTGCGCAGGTTGAGGCCGCATACGACATGATACTGATGCAAAGCCTATCCCAACGCCGAGCTGGGAAAGTCGCGAGCAGTCGAA TACGGTATGCTGATGTCAAGCCCGTAACTGCTCCAGGGATGATGGGATCAATGCCGAAGTGGCTACGAACCACAGTCAAGAACGCTCCGGTGTCAGTAGA GTCGCCAGTAGGTACTACCGATTTGGGGATACAAGCCGGGGTCTATGGCGCTCTAATAGTCCTGACTTACGCCAATGGGACCTCAGTTATGGTGCCCAAC ACCGTAGCTGCTGATGTCCCAGGGCTTCTCTTGGCAACAAGCTTCGGAGCTTCGTTGTACTTCATGACCAAGAAGAAGGTGAAACTAGGTAAGGCGGCTG TGGTCACTTTGGGAGGCCTTGTGGCTGGTGCGGTGGTGGGTTCAGCGGTCGAGAGCTGGCTACAGGTCGACATCGTCCCGTTTCTTGGTCTACACTCTCC CGCTGCTGTAATTAGCGAGTTCATCATAGTCTCGCAGTTTTTGGTCTCAGTTTACCTAAGGTGA
AA sequence Show only first row Show all	>Lus10005055 pacid=23149012 polypeptide=Lus10005055 locus=Lus10005055.g ID=Lus10005055.BGIv1.0 annot-version=v1.0 MAATLSLRPNHHRLSPSGASPSFLRPPYLSMPEFASYRCRTSIFAPPLRRMLARARSSRADDSAPFEMSLENARALLGVSAGASFDDVLRAKNSILSTCK DEPDAIAQVEAAYDMILMQSLSQRRAGKVASSRIRYADVKPVTAPGMMGSMPKWLRTTVKNAPVSVESPVGTTDLGIQAGVYGALIVLTYANGTSVMVPN TVAADVPGLLLATSFGASLYFMTKKKVKLGKAAVVTLGGLVAGAVVGSAVESWLQVDIVPFLGLHSPAAVISEFIIVSQFLVSVYLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20920			Protein of unknown function (D...		Lus10005055 [exp]	0	1
AT2G20920			Protein of unknown function (D...		Lus10005056 [exp]	1.0	0.9327
AT2G20920			Protein of unknown function (D...		Lus10027826 [exp]	8.8	0.8512
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	9.2	0.7627
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	16.3	0.7973
AT5G12470			Protein of unknown function (D...		Lus10016379 [exp]	22.7	0.7817
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	24.1	0.8171
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	29.6	0.8107
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	37.3	0.7901
AT3G52520			unknown protein		Lus10029420 [exp]	44.5	0.7856
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001756 [exp]	44.7	0.7806

Compare expression of checked genes

Lus10005055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.