Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59040 624 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G23590 326 / 1e-105 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT5G02860 148 / 1e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G41720 147 / 3e-36 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G12775 145 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 145 / 4e-36 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 144 / 7e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 144 / 8e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 144 / 2e-35 GUN1 genomes uncoupled 1 (.1) AT5G42310 142 / 4e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027829 [exp] 796 / 0 AT3G59040 703 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027828 [exp] 518 / 1e-179 AT5G23590 331 / 2e-113 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10013894 [exp] 159 / 4e-40 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 155 / 4e-39 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018318 [exp] 153 / 3e-38 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017134 [exp] 149 / 3e-37 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018075 [exp] 148 / 1e-36 AT2G41720 1020 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042068 [exp] 147 / 2e-36 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033110 [exp] 147 / 2e-36 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G220300 [exp] 664 / 0 AT3G59040 811 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G138100 [exp] 287 / 6e-91 AT5G23590 255 / 2e-84 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.019G021200 [exp] 158 / 8e-41 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.012G123600 [exp] 157 / 2e-40 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G257300 [exp] 156 / 8e-40 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 155 / 3e-39 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G049900 [exp] 155 / 7e-39 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G250200 [exp] 152 / 2e-38 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G074500 [exp] 150 / 5e-38 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G010900 [exp] 150 / 1e-37 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10005058 pacid=23148990 polypeptide=Lus10005058 locus=Lus10005058.g ID=Lus10005058.BGIv1.0 annot-version=v1.0 ATGGAGGTCGACCACTACGAGGTTCTAGGGTTACAATCGGGGGAGGAAGGGGCAAAGCTCACAGAGAATGAGATCTCTAAGGCATACAAACTGAAAGCCT TGGAATTGCACCCTGACAAGAGGCTCAATGACCCGAACGCGCACGACAACTTCCAAAAGCTGAAAAACTCATACGAGATCCTCAAGGACGAGAAGGCTCG CAAGCTGTTTGACGATTTGCTTCGTGTGAAGCGGGAACAGCAAGTGCGGAGGTCTCGTCAGGATTCGAAGCGGAGGAAGATGGTCTCCGATCTCGAAGGG AGAGAACGAGCTGCTGCTGCTTTTGGTGATTACACTCCTGATCCTGATTCAGTGGCTAGAGCGGAGGAAGAGAGGATTGCTAGGAAGCTTAAGGAGGAAA TTGACAGGATTCGCGCAATGCATTCGGGTAAAGGAGCTTCTGAGAAGAAGGAGAAGGAAGGGGTTAGGAAAGGGAGTGAAGCTGCTGCTTCGGACATGGA GAGGGATAAAGCGCTGAAAGTGTCTTGGGAGAGAATCGGCGAAGGATATGATGCAGAGAAGCTTAGAGAGCTGTTTTCGGAGTTCGGTGAGGTTGAGGAT GTCTTGATTAAGAGCTCGAAGAAGAGAGGTTCGGCTCTCGTTGTTATGTCTACGAAAGACGCTGCGGTTGCTGCTACTGGAAGTGTACTAGGGCATCTCT CGAATCCTCTACTGGTCTTGCCGGTTCAACGAAGCAAAGTAGCAGATTATCCTTCAAGCTCCCAGAAGTCGGCCGAATTCGAGGGAATAAGTAATCTGGT TGGGGCTGGTTACAAGTCTTTTGAAGATTCTGTATTTGAGAAGCTTCAAAAGGTTGGGGGACTTTCCTTCTGGCAGCTTTCAATTTCCCAATTTCTGGCT TTCTGCGCTCTATTTTTGCCCGCGCCGGCTTATCTATCTTCTCCGCTCCGAGTTCCTCCGAGGCAGTCGAAACTGGGGGTTTATCCTCCCAATTTTAATG TCAAAATCCGGACAAGGTTGGAAGTAGTAGCTAAGGGTATGTTGTCTCAAAGCAAGTTTATGCAGAGGAGGAAGAAAGTGGAAGTGTTCAAGGATTCTGC CGATGAAGCAGATCAGAAGAACTGGCGGAGACTGATGAAGCAAATTGACGATACTGGCTCTGCAGTTTCAGTGCTCAGAGGCGAAAAAAAGGTTCATAAC CAGGGGCTTGATCGACGTCTGGTTCTGGGTACTCTTGTGAGATTTAAACAGCTTAAGAAATGGAACCTTGTTGTTGAGATTTTGGAATGGCTTCGGTTGC AACAATGGTGGGATTTCAATGAAAGGGATTTCATTCTGCTGATTACAGCTTACGGGAAACAAGGCGACTTCAACAGAGCTGAGCAAGTTCTATCAGTCAT GAATAAGAAAGGTTACCAACCAAACGTTGTATCCCACACGGCACTTATGGAGGCGTATGGTAAAGGAGGCAAACATAAGAACGCTGAAGCCATTTTTCGA AGGATGAAGGCTTTGGGACCTGATCCTTCTGCTTTAACATATCAGATCATACTTAACATGTTTGTCCAGGCAAACAAGTTCGAAGAAGCTGAAGAAGTTT TCCACTCTCTTTTGAATGAGGAAAAACCACCTCTGAATCCAGACCAACGGATATTTCAATTGATGATATACATGTATAAGAAGGCTGGGAAGTACGAACA GGCTCGTAAGCTTTTTGGAATTATGGCAGAGCGTGGAGTTCCACAGTCAACTATCACTTACAATAGTCTCATGTCATTTGAAACTAATTACAAGGAGGTC TCCAGGATCTATGATCAGTTGCAAAGATCTGGTCTTCAACCTGATGTTGTCAGCTATTCATTACTCATTAATGCATATGGGAAAGCTCGGAGAGAAGATG AAGCCTTGGCTGTTTTTGAGGATATGCTGGATGCTGGTGTCAGGCCATCGCGAAAAGCTTATAACATTTTGCTTGATGCATTTGCTATCTCTGGAATGGT AGAGCAGGCTAGGATAGTGTTCAAGAGCATGAGAAGAAACAGAGTCACACCTGATATCTGCTCTTACGCAACAATGCTATCAGCATACGTCAACGCTGCT GACATGGACGGCGCTGAGAAGTTCTTCACTCGGATAAAACAAGACGGACTAGAAAACGACGTTGTCACATACGGGACGCTGATAAAAGGGTATGCAAAGG CGGCCGATACCGAGAAAATGATGGCGAGGAATACCAAGGTGTTCATGATATCACATAGAAAACGACCGTCAGTCGATGAACCATTGGTGCCTCATCCTAG TACGATTAGAGATGCTTGTTGTCTGGTTTATGCACCTCCGTAA
AA sequence Show only first row Show all	>Lus10005058 pacid=23148990 polypeptide=Lus10005058 locus=Lus10005058.g ID=Lus10005058.BGIv1.0 annot-version=v1.0 MEVDHYEVLGLQSGEEGAKLTENEISKAYKLKALELHPDKRLNDPNAHDNFQKLKNSYEILKDEKARKLFDDLLRVKREQQVRRSRQDSKRRKMVSDLEG RERAAAAFGDYTPDPDSVARAEEERIARKLKEEIDRIRAMHSGKGASEKKEKEGVRKGSEAAASDMERDKALKVSWERIGEGYDAEKLRELFSEFGEVED VLIKSSKKRGSALVVMSTKDAAVAATGSVLGHLSNPLLVLPVQRSKVADYPSSSQKSAEFEGISNLVGAGYKSFEDSVFEKLQKVGGLSFWQLSISQFLA FCALFLPAPAYLSSPLRVPPRQSKLGVYPPNFNVKIRTRLEVVAKGMLSQSKFMQRRKKVEVFKDSADEADQKNWRRLMKQIDDTGSAVSVLRGEKKVHN QGLDRRLVLGTLVRFKQLKKWNLVVEILEWLRLQQWWDFNERDFILLITAYGKQGDFNRAEQVLSVMNKKGYQPNVVSHTALMEAYGKGGKHKNAEAIFR RMKALGPDPSALTYQIILNMFVQANKFEEAEEVFHSLLNEEKPPLNPDQRIFQLMIYMYKKAGKYEQARKLFGIMAERGVPQSTITYNSLMSFETNYKEV SRIYDQLQRSGLQPDVVSYSLLINAYGKARREDEALAVFEDMLDAGVRPSRKAYNILLDAFAISGMVEQARIVFKSMRRNRVTPDICSYATMLSAYVNAA DMDGAEKFFTRIKQDGLENDVVTYGTLIKGYAKAADTEKMMARNTKVFMISHRKRPSVDEPLVPHPSTIRDACCLVYAPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10005058 [exp]	0	1
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Lus10038717 [exp]	2.2	0.7616
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10038965 [exp]	3.5	0.7451
AT5G15220			Ribosomal protein L27 family p...		Lus10010822 [exp]	4.6	0.6890
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	19.2	0.6525
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	21.2	0.6785
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	29.1	0.6726
AT5G07670			RNI-like superfamily protein (...		Lus10031164 [exp]	29.4	0.6785
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	31.5	0.6458
AT5G03230			Protein of unknown function, D...		Lus10019936 [exp]	32.0	0.6251
AT1G13810			Restriction endonuclease, type...		Lus10017632 [exp]	32.8	0.6313

Compare expression of checked genes

Lus10005058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.