Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16940 457 / 4e-155 Splicing factor, CC1-like (.1.2.3) AT5G09880 400 / 6e-134 Splicing factor, CC1-like (.1) AT4G34110 56 / 8e-08 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G22760 55 / 1e-07 PAB3 poly(A) binding protein 3 (.1) AT1G49760 54 / 2e-07 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G48920 52 / 1e-06 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (.1) AT5G16260 51 / 1e-06 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G30480 48 / 1e-05 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) AT1G10320 48 / 2e-05 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G11400 47 / 2e-05 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027830 [exp] 736 / 0 AT2G16940 553 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 531 / 0 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 525 / 0 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10002093 [exp] 398 / 4e-133 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10000826 [exp] 393 / 3e-131 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10010042 [exp] 64 / 2e-10 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 62 / 6e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 58 / 2e-08 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 58 / 2e-08 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137200 [exp] 474 / 3e-162 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G177000 [exp] 465 / 3e-158 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.005G148100 [exp] 401 / 3e-134 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.007G009800 [exp] 399 / 3e-132 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.014G025400 [exp] 63 / 3e-10 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 62 / 7e-10 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.001G304000 [exp] 58 / 2e-08 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 57 / 3e-08 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.004G229732 [exp] 56 / 5e-08 AT4G24270 860 / 0.0 EMBRYO DEFECTIVE 140 (.1.2) Potri.011G098100 [exp] 55 / 9e-08 AT1G30480 348 / 1e-118 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005059 pacid=23149001 polypeptide=Lus10005059 locus=Lus10005059.g ID=Lus10005059.BGIv1.0 annot-version=v1.0 ATGGATTTTGATGAGTATGATTACCTGGAAAAGATGGTTGATTACCCTGAACCTGTAAAGGTGAAGGAAACTGCTAACGGGAGTGAGCCTGGAAAATCTG GAGAGAGAGAACGTAGTCGGGGCTCGAAGCATAGAAGTGACGACAAGGAAGATGAGGATGATGACCACCGTCGTTCGAAGAGATCGAAATCAAGAGATGA TACTCGCGATCGTGATCGGCACAGAGAAAGAGGTTCATCCAAACATATCTCAGGATCTGGAGAAGGAGACAGGGATTTTCACAGGAGTAGTCATGAAAGC AGAGGTAAGGACAAGGGCAGGGATAGGGAGGAACGGAATGGGAAAGATAGAGACCGAGAACGAGAGAGGGATCGAGGTCATGGCAGGGAATTGGAGAAGG AGAAGACTGACAGAGATCGAGTACGTCGGAGTGAGAATCGTTCTGAAAGGGAGAAAAGTAAGGACAGAGAGCCTAAAGAACGGGAAACCGAGATAAATTT CAAAGATCGAGACAGGGGAAATAGAAGGAAAAAGGAGGATGGCACAGAGCCTGAAGCTGATCCTGAGCGAGATCAGAGGACCGTATTTGCCTATCAGATA TGTTTGAAGGCTGATGAAAGAGATGTTTATGAGTTCTTTTCAAGGGCCGGAAAGGTACGGGATGTTCGTCTCATAATGGATCGAAATTCCAGACGGTCAA AGGGAGTCGGGTATATTGAATTCTATGATGTGATGTCAGTCCCTATGGCAATTGCACTGTCTGGGCAGCCTCTTCGCAATGTCCCAGTGATGGTGAAACC TTCGGAGGCTGAGAAGAATCTTGTCCAGTCCACTGCAGCCGCAGCAATGGGCCCGGGAGGAGGCATCGGTCCTTATTCAGGAGGTGCTAGAAGGTTGTAT GTTTTTGAACCATTCGGTGCCGTAGAGTTGGTTCAACTGCCTCTTGACGAGACTGGACAGTGCAAGGGTTTTGGTTTTGTTCAGTTTGCTCGTTTAGAGG ATGCTAGGAATGCTTTAAATTTGAATGGACAAGTCGAGATTGCTGGCCGGCCTATCAAGGTGTCATCAGTCACTGATCAAACTGGTCAAGAAGGGGCAAC GGGCGATTTTGATGACGACGAGGGTGGCGGATTGGCACTGAATGCACGTTCCCGGGCAATGTTGATGCAAAAGTTAGATCGAAGTGGCACCGCCTCAGGT ATCACTTTACCAGGACCACCAGCTGGGATTCCTCAGGGTGTTGCTTCTCTTCTGCCCCCTGGGCTACCCGGATCGGGTCTTCAACTCCCTGTAGCTGCAT TTCCTGCTCTGGATGCAGTTGGTGTCCCGAGCGAGTGTCTATTGTTAAAGAATATGTTTGATCCCCAATCAGAGATGGAAGACGATTTTGATTTGGATAT CAAGGAAGATGTTCAAGATGAATGCTCAAAATATGGAACCTTGAGGCATATCTTTGTGGACAAAAACAGCATGGGTTTGGTGTATCTACGGTTCGAGAAT ACACAATCTGCAATGGGAGCTCAGCGTGCACTCCACGGAAGGTGGTTTGCTGGGAAGATGATCACAGCAACATACATGGGCATTGAGTATTTTGCTTTTC TCATAACACTGGTTGAATCTATATATTTAAGCTACCTTGACACCCATTGGAGATTTTGA
AA sequence Show only first row Show all	>Lus10005059 pacid=23149001 polypeptide=Lus10005059 locus=Lus10005059.g ID=Lus10005059.BGIv1.0 annot-version=v1.0 MDFDEYDYLEKMVDYPEPVKVKETANGSEPGKSGERERSRGSKHRSDDKEDEDDDHRRSKRSKSRDDTRDRDRHRERGSSKHISGSGEGDRDFHRSSHES RGKDKGRDREERNGKDRDRERERDRGHGRELEKEKTDRDRVRRSENRSEREKSKDREPKERETEINFKDRDRGNRRKKEDGTEPEADPERDQRTVFAYQI CLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLRNVPVMVKPSEAEKNLVQSTAAAAMGPGGGIGPYSGGARRLY VFEPFGAVELVQLPLDETGQCKGFGFVQFARLEDARNALNLNGQVEIAGRPIKVSSVTDQTGQEGATGDFDDDEGGGLALNARSRAMLMQKLDRSGTASG ITLPGPPAGIPQGVASLLPPGLPGSGLQLPVAAFPALDAVGVPSECLLLKNMFDPQSEMEDDFDLDIKEDVQDECSKYGTLRHIFVDKNSMGLVYLRFEN TQSAMGAQRALHGRWFAGKMITATYMGIEYFAFLITLVESIYLSYLDTHWRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	0	1
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	2.0	0.8361
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10005193 [exp]	2.6	0.8140
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	4.6	0.8379
AT1G23230			unknown protein		Lus10035997 [exp]	5.5	0.8472
AT3G25840			Protein kinase superfamily pro...		Lus10021688 [exp]	6.5	0.7940
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041911 [exp]	7.1	0.8379
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	8.4	0.8018
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	8.8	0.8143
AT1G10380			Putative membrane lipoprotein ...		Lus10037078 [exp]	12.0	0.7771
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	12.2	0.7593

Compare expression of checked genes

Lus10005059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.